View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_24 (Length: 385)
Name: NF5258_high_24
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 35835270 - 35834911
Alignment:
| Q |
17 |
aatcccttgtatgattcaagtttgcatgcaagagatgctagcaaaggattttaccaataaattttctgcctttaaaagcctcaattattcaagctttgtg |
116 |
Q |
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| T |
35835270 |
aatcccttgtatgattcaagtttgcatgcaagagatgctagcaaaggattttaccaataaattttctgcctttaaaagcctcaattattcaagctttgtg |
35835171 |
T |
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| Q |
117 |
tctaatcaaaactcgacataaactttaattaaatttagtggctaatttcttcataatatcagaacacaaaatgtcacttgcatcttttagtatcaactag |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35835170 |
tctaatcaaaactcgacataaactttaataaaatttagtggctaatttcttcataatatcagaacacaaaatgtcacttgcatcttttagtatcaactag |
35835071 |
T |
|
| Q |
217 |
aatgaagaaagaggacagacaacatcttatctgtgacttcttagcatcaaagccaagcacccaaccgtcaataatacccnnnnnnngtctcaaaagtatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
35835070 |
aatgaagaaagaggacagacaacatcttatctgtgacttcttagcatcaaagcccagcacccaaccgtcaataataccctttttttgtctcaaaagtatc |
35834971 |
T |
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| Q |
317 |
ctttaataatgtgtttttaaaatataaaaatggcaaaaggcgaaaaatgaatagtataat |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35834970 |
ctttaataatgtgtttttaaaatataaaaatggcaaaaggcgaaaaatgaatagtgtaat |
35834911 |
T |
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