View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5258_high_29 (Length: 365)
Name: NF5258_high_29
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 23 - 354
Target Start/End: Complemental strand, 15397870 - 15397528
Alignment:
| Q |
23 |
ttactactacaagatcttatcacatgattttcaaaagggttagtagtgaggaccataattgtcctataacacagcatataattatgagggtgcttttaaa |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15397870 |
ttaccactacaagatcttatcacatgattttcaaaagggttagtagtgaggaccataattgtcctataacacagcatataattatgagggtgcttttaaa |
15397771 |
T |
|
| Q |
123 |
aatgattttggttgcatgctcacatgatccacagtgcatttaatgcaccaaattattacttccgcagaaagagaaccgataaagatttttcttttaatat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15397770 |
aatgattttggttgcatgctcacatgatccacagtgcatttaatgcaccaaattattacttccgcagaaagagaa-cgataaagatttttcttttaatat |
15397672 |
T |
|
| Q |
223 |
aaaacgaaaacgat-----------agttaaaaatataaaggatgaaattatgaataaattcata-cttggagttaataacatacaacaatatcctataa |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
15397671 |
aaaacgaaaacgatttttgtacatcagttaaaaatataaaggatgaaattatgaataaattcatagtttcaagttaataacatacaacaatatcctataa |
15397572 |
T |
|
| Q |
311 |
attatatgataagattaaagttattgaaaatttcatgtttttga |
354 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
15397571 |
attatatgataagattaaagtcattgaaaaattcatatttttga |
15397528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University