View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_33 (Length: 355)
Name: NF5258_high_33
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_33 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 27648430 - 27648760
Alignment:
| Q |
19 |
acattgccagtacaaagttctgccaaagatgcatccaagggaccagatatcaatcttcttgtcatatgaaatcccgagaataagctcaggagcacgatag |
118 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
27648430 |
acattgccggtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcatatgaaagcccgagaataacctcaggagcacgatag |
27648528 |
T |
|
| Q |
119 |
gacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaaccaaaa |
218 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
27648529 |
gacctcgactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcacatcggtcgtagcttttaaccaaaa |
27648628 |
T |
|
| Q |
219 |
tattctccggcttcaagtaacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataacaaatcaag |
318 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
27648629 |
tattctccggcttcaagtcgcaatgtgttagtccaaggttatgtaagtactgaagtgcttccaaacattgaatggtaattgattgcaataacaaatcaag |
27648728 |
T |
|
| Q |
319 |
acaagtttctaatgagacaatagtataatcta |
350 |
Q |
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||||||||||||||||||| ||||| |||||| |
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| T |
27648729 |
acaagtttctaatgagacagtagtagaatcta |
27648760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 27708615 - 27708927
Alignment:
| Q |
19 |
acattgccagtacaaagttctgccaaagatgcatccaagggaccagatatcaatcttcttgtcatatgaaatcccgagaataagctcaggagcacgatag |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| |||| |
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| T |
27708615 |
acattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataacctcgggagcactatag |
27708713 |
T |
|
| Q |
119 |
gacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaaccaaaa |
218 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27708714 |
gacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcacatcggctgtagcttttaaccaaaa |
27708813 |
T |
|
| Q |
219 |
tattctccggcttcaagtaacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataacaaatcaag |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
27708814 |
tattctccggcttcaagtcacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaacattgaatggtaattgactgcaaaaacaaatcaag |
27708913 |
T |
|
| Q |
319 |
acaagtttctaatg |
332 |
Q |
| |
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|||||||| ||||| |
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| T |
27708914 |
acaagtttataatg |
27708927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 27728441 - 27728753
Alignment:
| Q |
19 |
acattgccagtacaaagttctgccaaagatgcatccaagggaccagatatcaatcttcttgtcatatgaaatcccgagaataagctcaggagcacgatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| |||| |
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| T |
27728441 |
acattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataacctcgggagcactatag |
27728539 |
T |
|
| Q |
119 |
gacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaaccaaaa |
218 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27728540 |
gacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcacatcggctgtagcttttaaccaaaa |
27728639 |
T |
|
| Q |
219 |
tattctccggcttcaagtaacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataacaaatcaag |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
27728640 |
tattctccggcttcaagtcacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaacattgaatggtaattgactgcaaaaacaaatcaag |
27728739 |
T |
|
| Q |
319 |
acaagtttctaatg |
332 |
Q |
| |
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|||||||| ||||| |
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| T |
27728740 |
acaagtttataatg |
27728753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 157 - 310
Target Start/End: Original strand, 27597646 - 27597799
Alignment:
| Q |
157 |
aaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaaccaaaatattctccggcttcaagtaacaatgtattagtccaagg |
256 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27597646 |
aaaacaactacttccaagatcaatgaccttcacctcacatcggctgtagcttttaaccaaaatattctccggcttcaagtcacaatgtattagtccaagg |
27597745 |
T |
|
| Q |
257 |
ttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataac |
310 |
Q |
| |
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|||||||||||||||||||||||| || ||| |||||||||||||||||||||| |
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| T |
27597746 |
ttatgtaaatactgaagtgcttcctaatattgaatggtaattgactgcaataac |
27597799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 7020 - 7332
Alignment:
| Q |
19 |
acattgccagtacaaagttctgccaaagatgcatccaagggaccagatatcaatcttcttgtcatatgaaatcccgagaataagctcaggagcacgatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| |||| |
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| T |
7020 |
acattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataacctcgggagcacaatag |
7118 |
T |
|
| Q |
119 |
gacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaaccaaaa |
218 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7119 |
gacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcacatcggctgtagcttttaaccaaaa |
7218 |
T |
|
| Q |
219 |
tattctccggcttcaagtaacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataacaaatcaag |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| |
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|
| T |
7219 |
tattctccggcttcaagtcacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaacattgaatggtaattgactgcaaaaacaaatcaag |
7318 |
T |
|
| Q |
319 |
acaagtttctaatg |
332 |
Q |
| |
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|||||||| ||||| |
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|
| T |
7319 |
acaagtttataatg |
7332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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