View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_36 (Length: 340)
Name: NF5258_high_36
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 29175354 - 29175669
Alignment:
| Q |
9 |
acatcatcatacatctttctaataacaattataactatgcaaatatagaacttaattacataactacccttcctcattcaaagcaattacatgttgactt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29175354 |
acatcatcatacatctttctaataacaattataactatgcaaatatagaacttaattacataactacccttccccattcaaagcaattacatgttgactt |
29175453 |
T |
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| Q |
109 |
ttccacttctgttcccactctcattnnnnnnnnnnnnnncacatttcatctccaccttctctataattatttccatctttaaaaaattctcacttgtgaa |
208 |
Q |
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| T |
29175454 |
ttccacttccgttcccactctcatttatatatatatatacacatttcatctccaccttctctataattatttccatctttaaaaaattctcacttgtgaa |
29175553 |
T |
|
| Q |
209 |
gtttgaacttgtttcttaatttctcttctatatc-tttgttagaaaagaaaaaatgagcaacataagcatggttgaggcaaagctaccaccaggattcag |
307 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29175554 |
gtttgaacctgtttcttaatttctcttctatatcttttgttagaaaagaaaaaatgagcaacataagcatggttgaggcaaagctaccaccagggttcag |
29175653 |
T |
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| Q |
308 |
atttcatcctagagat |
323 |
Q |
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|||||||||||||||| |
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| T |
29175654 |
atttcatcctagagat |
29175669 |
T |
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