View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_49 (Length: 252)
Name: NF5258_high_49
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42225682 - 42225918
Alignment:
| Q |
1 |
agcttacactggggacaagaacaagaagcccgagatgatatttcctgaagttatgaaaattgtgaagaaaaagatccataagattctaagaactaagaat |
100 |
Q |
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| T |
42225682 |
agcttacactggggacaagaacaagaagcccgagatgatatttcctgaagttatgaaaattgtgaagaaaaagatccataagattctaagaactaagaat |
42225781 |
T |
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| Q |
101 |
attaagaaattatatatgtatac----atatatacacataaattagtagtgtaacaactagaaagtaagagacttgagtaccgacctataacaccaataa |
196 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42225782 |
attaagaaattatatatgtatacatatatatatacacataaattagtagtgtaacaactagcaagtaagagacttgagtaccgacctataacaccaataa |
42225881 |
T |
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| Q |
197 |
ttgttcgagcaatatgtgctgctgctgcggtcatgat |
233 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42225882 |
ttgttcgagcaatatgtgctgctgctgcggtcatgat |
42225918 |
T |
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