View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_51 (Length: 251)
Name: NF5258_high_51
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_51 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 43411354 - 43411137
Alignment:
| Q |
45 |
agcaagaatagcaacattatttaacgtgcataacttgagttatagaaattcatttgagatgaaagttgtgtcattgaaaagcgnnnnnnngttaatgtaa |
144 |
Q |
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| T |
43411354 |
agcaagaatagcaacattatttatcgtgcataacttgagttatagaaattcatttgagatgaaagttgtgtcattgaaaagcgaaaaaaagttaatgtaa |
43411255 |
T |
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| Q |
145 |
ttcttatgagtgagatgaacaaaatagtttatgtaatcacgaagactacat-----------gtttggtatgatgctttgttaactaaaactctaattaa |
233 |
Q |
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| T |
43411254 |
ttcttatgagtgagatgaacaaaatagtttatgtaatcacaaagactacatgagaagtaacagtttggtatgatgctttgttaactaaaactctaattaa |
43411155 |
T |
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| Q |
234 |
acaatatgatgtgtaatt |
251 |
Q |
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|||| | ||||||||||| |
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| T |
43411154 |
acaacaagatgtgtaatt |
43411137 |
T |
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