View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5258_high_54 (Length: 247)
Name: NF5258_high_54
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 46772867 - 46773104
Alignment:
| Q |
1 |
aaagtgggcaaggtttctgacttcattttcatcaatgaaaccgttgtggttggcgtctgcaaacttgaagtctgtatcacaactccaagatgcaaagagt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46772867 |
aaagtggacaaggtttctgacttcattttcatcaatgaaaccgttgtggttggcgtctgcaaacttgaagtctgtatcacaactccaagatgcaaagagt |
46772966 |
T |
|
| Q |
101 |
cctctagcaaggcgcacagcatgtcgcagttcctctttgctcattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46772967 |
cctctagcaaggcgcacagcatgtcgcagttcctctttgctcattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctcca |
46773066 |
T |
|
| Q |
201 |
ccgtcatcacacgcttgccatgatgacaattgaaccct |
238 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
46773067 |
ccgtcatcacacgctttccatgatgaccattgaaccct |
46773104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 46768084 - 46768309
Alignment:
| Q |
1 |
aaagtgggcaaggtttctgacttcattttcatcaatgaaaccgttgtggttggcgtctgcaaacttgaagtctgtatcaca-actccaagatgcaaagag |
99 |
Q |
| |
|
||||||| |||||||| ||| |||||| ||||||||||||||||| || |||| ||||||| | ||||||| | || | ||||||||| ||| ||| |
|
|
| T |
46768084 |
aaagtggacaaggtttttgaattcattgtcatcaatgaaaccgttatgattggtgtctgcagcgtaaaagtctgga-catatactccaagagacaaggag |
46768182 |
T |
|
| Q |
100 |
tcctctagcaaggcgcacagcatgtcgcagttcctctttgctcattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctcc |
199 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
46768183 |
tcctcttgtaaggcgcacagcatgtcgcagttcctctttgctgattttgccatcattttttgtgtcaaatgttgtcttcaaccataacttgaattgctcc |
46768282 |
T |
|
| Q |
200 |
accgtcatcacacgcttgccatgatga |
226 |
Q |
| |
|
|||||||||||||| || || |||||| |
|
|
| T |
46768283 |
accgtcatcacacgtttcccttgatga |
46768309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University