View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_55 (Length: 241)
Name: NF5258_high_55
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_55 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 50510638 - 50510860
Alignment:
| Q |
18 |
cttgttccattacccttgttccatcgtttcttcatcacccaccccaattttgattagtaatgactcaagtgaagcaatcaaagttttctttgttgacaaa |
117 |
Q |
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| T |
50510638 |
cttgttccattacccttgttccatcgtttcttcatcacccaccc-aattttgattagtaatgactcaagtgaagcaatcaaagttttctttgttgacaaa |
50510736 |
T |
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| Q |
118 |
cgaggacaaagtactttagtcacatggcaaaaggtagtttttatcaacatcttcatttattatgttatattagaagttcagcgacaaagcatataggtca |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50510737 |
cgaagacaaagtactttagtcacatggcaaaaggtagtttttatcaacatcttcatttattatgttatattagaagttcagcgacaaagcatataggtca |
50510836 |
T |
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| Q |
218 |
gagggaattttgtccctactcccc |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
50510837 |
gagggaattttgtccctactcccc |
50510860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 23068430 - 23068327
Alignment:
| Q |
32 |
cttgttccatcgtttcttcatcacccaccccaattttgattagtaa-tgactcaagtgaagcaatcaaagttttctttgttgacaaacgaggacaaagta |
130 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |||||||| |
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| T |
23068430 |
cttgttccatcgtttcttcatcaccttcctcaattttgattagtaaatgattcaagtgaagaaatcaaagttttctttgttgacaaacaaacacaaagta |
23068331 |
T |
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| Q |
131 |
cttt |
134 |
Q |
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|||| |
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| T |
23068330 |
cttt |
23068327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 23068224 - 23068179
Alignment:
| Q |
165 |
catcttcatttattatgttatattagaagttcagcgacaaagcata |
210 |
Q |
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| T |
23068224 |
catcttcatttattatgtgatatcaaaagttcaacgacaaagcata |
23068179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 143466 - 143411
Alignment:
| Q |
62 |
caattttgattagtaatgactcaagtgaagcaatcaaagttttctttgttgacaaa |
117 |
Q |
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||||||| |||||||| ||| |||||||||||| |||||||| ||||||||||||| |
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| T |
143466 |
caatttttattagtaacgacacaagtgaagcaaccaaagtttcctttgttgacaaa |
143411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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