View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_57 (Length: 237)
Name: NF5258_high_57
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 43218823 - 43219028
Alignment:
| Q |
14 |
attattctcaatactccgtgacaacttagtaacatagacactaaaaggagaatcaaatgcgcgtgggcgttttgggagatcaggtagtgtatttcttata |
113 |
Q |
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| T |
43218823 |
attattctcaatactccgtgacaacttagtaacatagacactaaaaggagaatcaaatgcgtgtgggcgttttgggagatcaggtagtgtatttcttata |
43218922 |
T |
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| Q |
114 |
tcatccttactaacagtcaagaaatttccagctaattcctgtcacacaaaggatgaattagttaatcacattcattctaagtgttgaatcaatcccacac |
213 |
Q |
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| T |
43218923 |
tcatccttactaacagtcaagaaatttccagctaattcctgtcacacaaaggatgaattagttaatcacattcattctaagtgttgaatcaatcccacac |
43219022 |
T |
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| Q |
214 |
tacaaa |
219 |
Q |
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|||||| |
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| T |
43219023 |
tacaaa |
43219028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 43222412 - 43222468
Alignment:
| Q |
118 |
ccttactaacagtcaagaaatttccagctaattcctgtcacacaaaggatgaattag |
174 |
Q |
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||||| |||| ||||| || ||||| ||||||||||||||||||||| |||||||| |
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| T |
43222412 |
ccttattaactgtcaacaatcttccatctaattcctgtcacacaaagggtgaattag |
43222468 |
T |
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