View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_58 (Length: 237)
Name: NF5258_high_58
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 32450628 - 32450763
Alignment:
| Q |
90 |
taacgacaatcaaagtcgtggttagttttgttttatggataattaacgagtcgtaacaccttgttatatttattacctgtacac--atatatttaaaatg |
187 |
Q |
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| T |
32450628 |
taacgacaatcaaagtcgtggttagttttgttttatggataattaacgagtcgtaacaccttgttatatttattacctgaacacatatatatttaaaatg |
32450727 |
T |
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| Q |
188 |
tgttaaccatctactatattattttgatgtgaaattt |
224 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
32450728 |
tgtt-accatctactatattattttgatgtgaaattt |
32450763 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 32431753 - 32431835
Alignment:
| Q |
1 |
tatttgaatacaagttgtacttaatgaataccactaagaacaatttccttaaacacctaaaaattatgtttatttgaagactt |
83 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |
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| T |
32431753 |
tatttgaatacaagttgtgcttaatgaataccactaagaacaatttctttaaacacctgaaaattatgtttatttgaacactt |
32431835 |
T |
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