View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5258_high_6 (Length: 606)

Name: NF5258_high_6
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5258_high_6
NF5258_high_6
[»] chr5 (5 HSPs)
chr5 (29-552)||(41718289-41718811)
chr5 (114-552)||(41723015-41723453)
chr5 (114-453)||(34359934-34360273)
chr5 (133-453)||(34352226-34352546)
chr5 (114-453)||(29585300-29585640)
[»] chr4 (14 HSPs)
chr4 (29-521)||(48701737-48702228)
chr4 (29-451)||(42265883-42266304)
chr4 (114-521)||(48697131-48697539)
chr4 (29-521)||(30950099-30950607)
chr4 (112-451)||(42270602-42270941)
chr4 (120-452)||(24520031-24520363)
chr4 (113-521)||(30945476-30945901)
chr4 (114-405)||(10427315-10427597)
chr4 (127-322)||(48782850-48783031)
chr4 (238-366)||(1979253-1979375)
chr4 (167-265)||(17248015-17248112)
chr4 (116-193)||(36615361-36615438)
chr4 (125-193)||(30165900-30165968)
chr4 (180-218)||(1979567-1979604)
[»] chr3 (11 HSPs)
chr3 (29-452)||(5823191-5823613)
chr3 (33-521)||(2817183-2817658)
chr3 (114-453)||(5818513-5818852)
chr3 (114-407)||(54545906-54546200)
chr3 (114-267)||(24659136-24659287)
chr3 (122-228)||(4579254-4579360)
chr3 (128-300)||(31204781-31204950)
chr3 (267-405)||(24671173-24671301)
chr3 (152-309)||(35977103-35977258)
chr3 (102-158)||(25877086-25877142)
chr3 (280-405)||(4579126-4579241)
[»] chr8 (4 HSPs)
chr8 (29-452)||(9444008-9444430)
chr8 (114-452)||(9439372-9439710)
chr8 (131-187)||(4799315-4799371)
chr8 (113-186)||(4844870-4844943)
[»] chr6 (12 HSPs)
chr6 (29-521)||(27878625-27879134)
chr6 (114-453)||(26976131-26976470)
chr6 (114-452)||(1234680-1235018)
chr6 (114-451)||(27873990-27874327)
chr6 (114-405)||(18967912-18968194)
chr6 (113-389)||(30986552-30986830)
chr6 (160-402)||(30966683-30966923)
chr6 (29-165)||(30967674-30967809)
chr6 (119-305)||(21966677-21966860)
chr6 (133-282)||(23012520-23012667)
chr6 (472-520)||(30986430-30986478)
chr6 (472-511)||(30966566-30966605)
[»] chr2 (16 HSPs)
chr2 (123-521)||(5198664-5199062)
chr2 (29-277)||(825632-825880)
chr2 (35-403)||(15602905-15603272)
chr2 (114-277)||(830288-830452)
chr2 (121-381)||(28715816-28716070)
chr2 (123-405)||(30396920-30397191)
chr2 (327-407)||(830209-830291)
chr2 (114-274)||(31592910-31593068)
chr2 (327-407)||(825553-825635)
chr2 (183-334)||(13843865-13844014)
chr2 (114-336)||(13840240-13840456)
chr2 (209-336)||(8004167-8004292)
chr2 (134-249)||(12175768-12175881)
chr2 (455-521)||(28715682-28715747)
chr2 (129-178)||(9358158-9358207)
chr2 (175-284)||(42117769-42117876)
[»] chr7 (8 HSPs)
chr7 (119-405)||(16183636-16183913)
chr7 (114-406)||(30235043-30235339)
chr7 (100-336)||(8139950-8140183)
chr7 (33-300)||(8138384-8138645)
chr7 (29-117)||(25441073-25441160)
chr7 (127-272)||(5102606-5102749)
chr7 (114-229)||(36528415-36528529)
chr7 (471-521)||(30234924-30234974)
[»] scaffold0074 (1 HSPs)
scaffold0074 (114-405)||(27226-27508)
[»] chr1 (4 HSPs)
chr1 (114-405)||(46191266-46191546)
chr1 (119-300)||(30697120-30697300)
chr1 (114-300)||(4130215-4130401)
chr1 (256-336)||(30674787-30674865)


Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 29 - 552
Target Start/End: Complemental strand, 41718811 - 41718289
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  41718811 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcgg-ctctgataccactgttaggtaccagag 41718713  T
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718712 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 41718613  T
Q  229 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  41718612 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 41718513  T
Q  329 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc 428  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41718512 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 41718413  T
Q  429 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaatttcatttattaccata 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || || |||||| |||||| |||||||||||||||||    
T  41718412 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccata 41718313  T
Q  529 gataatagccaaactgccaaccaa 552  Q
    ||||||||||||||||||||||||    
T  41718312 gataatagccaaactgccaaccaa 41718289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 114 - 552
Target Start/End: Complemental strand, 41723453 - 41723015
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41723354  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  41723353 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact 41723254  T
Q  314 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac 413  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  41723253 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac 41723154  T
Q  414 aagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaatt 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || || |||||| |||||| ||    
T  41723153 aagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattt 41723054  T
Q  514 tcatttattaccatagataatagccaaactgccaaccaa 552  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41723053 tcatttattaccatagataatagccaaactgccaaccaa 41723015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 114 - 453
Target Start/End: Complemental strand, 34360273 - 34359934
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca 34360174  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34360173 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact 34360074  T
Q  314 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac 413  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360073 ctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaac 34359974  T
Q  414 aagctttacttgttcttgtgttgttactgatttgggatga 453  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34359973 aagctttacttgttcttgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 133 - 453
Target Start/End: Complemental strand, 34352546 - 34352226
Alignment:
Q  133 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  233 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34352446 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga 34352347  T
Q  333 atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt 432  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352346 atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt 34352247  T
Q  433 gttgttactgatttgggatga 453  Q
    |||||||||||||||||||||    
T  34352246 gttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 114 - 453
Target Start/End: Original strand, 29585300 - 29585640
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 29585399  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  29585400 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccact 29585499  T
Q  314 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaa 412  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |    
T  29585500 ctctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctaga 29585599  T
Q  413 caagctttacttgttcttgtgttgttactgatttgggatga 453  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29585600 caagctttacttgttgttgtgttgttactgatttgggatga 29585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 29 - 521
Target Start/End: Original strand, 48701737 - 48702228
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  48701737 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcgg-ctctgataccactgttaggtaccagag 48701835  T
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701836 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 48701935  T
Q  229 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  48701936 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 48702035  T
Q  329 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc 428  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48702036 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 48702135  T
Q  429 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaatttcatttat 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  48702136 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 48702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 29 - 451
Target Start/End: Complemental strand, 42266304 - 42265883
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  42266304 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcgg-ctctgataccactgttagataccagag 42266206  T
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266205 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 42266106  T
Q  229 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266105 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 42266006  T
Q  329 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc 428  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42266005 gagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 42265906  T
Q  429 ttgtgttgttactgatttgggat 451  Q
    |||||||||||||||||||||||    
T  42265905 ttgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 114 - 521
Target Start/End: Original strand, 48697131 - 48697539
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48697230  T
Q  214 aataaggggaaaa-aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac 312  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  48697231 aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 48697330  T
Q  313 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaa 412  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  48697331 tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaa 48697430  T
Q  413 caagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48697431 caagctttacttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaat 48697530  T
Q  513 ttcatttat 521  Q
    | |||||||    
T  48697531 tgcatttat 48697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 29 - 521
Target Start/End: Original strand, 30950099 - 30950607
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  30950099 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggag-ctctgataccactgttaggtaccagag 30950197  T
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 228  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30950198 taacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaa 30950296  T
Q  229 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30950297 ccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaatag 30950396  T
Q  329 gagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tcta-----aacaa----- 415  Q
    ||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |||||         
T  30950397 gagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagt 30950496  T
Q  416 ----gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaacca 510  Q
        |  |||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30950497 tgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaacca 30950596  T
Q  511 atttcatttat 521  Q
    ||| |||||||    
T  30950597 attgcatttat 30950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 112 - 451
Target Start/End: Complemental strand, 42270941 - 42270602
Alignment:
Q  112 actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 211  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270941 actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 42270842  T
Q  212 caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270841 caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca 42270742  T
Q  312 ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||    
T  42270741 ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaa 42270642  T
Q  412 acaagctttacttgttcttgtgttgttactgatttgggat 451  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42270641 acaagctttacttgttcttgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 120 - 452
Target Start/End: Original strand, 24520031 - 24520363
Alignment:
Q  120 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 219  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  220 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24520131 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct 24520230  T
Q  320 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctt 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  24520231 tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctt 24520330  T
Q  420 tacttgttcttgtgttgttactgatttgggatg 452  Q
    |||||||||||||||||||||||||||||||||    
T  24520331 tacttgttcttgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 113 - 521
Target Start/End: Original strand, 30945476 - 30945901
Alignment:
Q  113 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945476 ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 30945575  T
Q  213 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac 312  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30945576 aaataaggg-aaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccac 30945674  T
Q  313 tctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tct 409  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||    
T  30945675 tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattct 30945774  T
Q  410 a-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaag 494  Q
    |     |||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945775 actaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaag 30945874  T
Q  495 agtcatgccccaaccaatttcatttat 521  Q
    || |||||||||||||||| |||||||    
T  30945875 agccatgccccaaccaattgcatttat 30945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 114 - 405
Target Start/End: Complemental strand, 10427597 - 10427315
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca 10427498  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac 312  Q
    |||||||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||| |    
T  10427497 aataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-c 10427399  T
Q  313 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 405  Q
    ||||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  10427398 tctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 127 - 322
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
Q  127 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 226  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| |||||||||||||||||||||| |||||||||   |||||||||||| |||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaa 48782933  T
Q  227 aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 322  Q
    |  || ||||         ||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||||||||||||    
T  48782932 a--catgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 238 - 366
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
Q  238 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 337  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | |||||||||||||||||||| ||||||||       
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- 1979281  T
Q  338 aactaacacaaactaggagaaacctcaca 366  Q
     |||| ||| ||| |||||||||||||||    
T  1979280 -actagcactaaccaggagaaacctcaca 1979253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
Q  167 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa 265  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| |||||||||| |||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa 17248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  116 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 193  Q
    |||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  125 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 193  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  180 aacacacaatattttacgtggaaacccctcaacaaataa 218  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 29 - 452
Target Start/End: Original strand, 5823191 - 5823613
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  5823191 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcgg-ctctgataccactgttaggtaccagag 5823289  T
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823290 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 5823389  T
Q  229 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5823390 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag 5823489  T
Q  329 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc 428  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5823490 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 5823589  T
Q  429 ttgtgttgttactgatttgggatg 452  Q
    ||||||||||||||||||||||||    
T  5823590 ttgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 33 - 521
Target Start/End: Original strand, 2817183 - 2817658
Alignment:
Q  33 agcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagagtaac 132  Q
    ||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||    
T  2817183 agcatactaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcgg-ctttgataccactgttaggtaccagagtaac 2817281  T
Q  133 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 232  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2817282 aaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaaccac 2817380  T
Q  233 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctctctcttataaatagga 330  Q
     ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  2817381 agggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaatagga 2817480  T
Q  331 gaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttct 429  Q
    |||||| |||||| |||||||              ||||||||||| |||| ||||||||||||||||||||| ||  ||||||||| ||||||||||||    
T  2817481 gaatactaactaatacaaact--------------aggagaaactatttttcctctctatattttttctctcattaccctaaacaagttttacttgttct 2817566  T
Q  430 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaatttcatttat 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  2817567 tgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattgcatttat 2817658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 114 - 453
Target Start/End: Original strand, 5818513 - 5818852
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5818513 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact 5818612  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5818613 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact 5818712  T
Q  314 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac 413  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  5818713 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac 5818812  T
Q  414 aagctttacttgttcttgtgttgttactgatttgggatga 453  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5818813 aagctttacttgttcttgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 114 - 407
Target Start/End: Complemental strand, 54546200 - 54545906
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  54546200 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca 54546102  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54546101 aataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccact 54546002  T
Q  314 ctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat 407  Q
    |||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54546001 ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 54545906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24659136 tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca 24659235  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 267  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24659236 aataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
Q  122 accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 221  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 4579261  T
Q  222 gaaaaaa 228  Q
    |||||||    
T  4579260 gaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
Q  128 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 227  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T
Q  228 accacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 300  Q
    | ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204879 atcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 405
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
Q  267 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 366  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca 24671262  T
Q  367 ggagaaactaatttttctctctatattttttctctcact 405  Q
    ||||||||||  ||| |||||||||||||| ||||||||    
T  24671263 ggagaaactatatttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 152 - 309
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
Q  152 aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac 250  Q
    ||||||||||  |||||||||| || |||||| ||||||||| ||||  ||| || |||||| |||  ||||||||  |||  |||||||||| | ||      
T  35977258 aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt 35977162  T
Q  251 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 309  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
Q  102 ctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataa 158  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||    
T  25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 405
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
Q  280 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 379  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||  |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  380 tttctctctatattttttctctcact 405  Q
    || |||||||||||||| ||||||||    
T  4579151 ttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 29 - 452
Target Start/End: Original strand, 9444008 - 9444430
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  9444008 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcgg-ctctgataccactgttaggtaccagag 9444106  T
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444107 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 9444206  T
Q  229 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9444207 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 9444306  T
Q  329 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc 428  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9444307 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 9444406  T
Q  429 ttgtgttgttactgatttgggatg 452  Q
    ||||||||||||||||||||||||    
T  9444407 ttgtgttgttactgatttgggatg 9444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 114 - 452
Target Start/End: Original strand, 9439372 - 9439710
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439372 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 9439471  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  9439472 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact 9439571  T
Q  314 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac 413  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  9439572 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac 9439671  T
Q  414 aagctttacttgttcttgtgttgttactgatttgggatg 452  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9439672 aagctttacttgttcttgtgttgttactgatttgggatg 9439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  131 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 187  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 4844943 - 4844870
Alignment:
Q  113 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacac 186  Q
    ||||||||||| |||| ||||||| |||||||||| |  ||||||||||  |||| |||| ||| |||||||||    
T  4844943 ctgttaggtacaagagaaacaaaacattatcacgctgtaaaaataagagttgagataagaagaattgaacacac 4844870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 29 - 521
Target Start/End: Original strand, 27878625 - 27879134
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27878625 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggg-ctctgataccactgttaggtaccagag 27878723  T
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878724 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 27878823  T
Q  229 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878824 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 27878923  T
Q  329 gagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tcta-----aacaa----- 415  Q
    ||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |||||         
T  27878924 gagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagt 27879023  T
Q  416 ----gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaacca 510  Q
        |  |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27879024 tgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaacca 27879123  T
Q  511 atttcatttat 521  Q
    ||| |||||||    
T  27879124 attgcatttat 27879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 114 - 453
Target Start/End: Original strand, 26976131 - 26976470
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 26976230  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26976231 aataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact 26976330  T
Q  314 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac 413  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  26976331 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac 26976430  T
Q  414 aagctttacttgttcttgtgttgttactgatttgggatga 453  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26976431 aagctttacttgttcttgtgttgttactgatttgggatga 26976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 114 - 452
Target Start/End: Complemental strand, 1235018 - 1234680
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 1234919  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  1234918 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact 1234819  T
Q  314 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac 413  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  1234818 ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac 1234719  T
Q  414 aagctttacttgttcttgtgttgttactgatttgggatg 452  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1234718 aagctttacttgttcttgtgttgttactgatttgggatg 1234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 114 - 451
Target Start/End: Original strand, 27873990 - 27874327
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873990 tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27874089  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874090 aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 27874189  T
Q  314 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  27874190 ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaac 27874289  T
Q  414 aagctttacttgttcttgtgttgttactgatttgggat 451  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27874290 aagctttacttgttcttgtgttgttactgatttgggat 27874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 114 - 405
Target Start/End: Complemental strand, 18968194 - 18967912
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca 18968095  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac 312  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||| | |    
T  18968094 aataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-c 18967996  T
Q  313 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 405  Q
    |||||| |  |||||||||||||| |||        |||||||||||||||||| |||||||||  ||| |||| ||||||||| ||||||||    
T  18967995 tctctcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 113 - 389
Target Start/End: Complemental strand, 30986830 - 30986552
Alignment:
Q  113 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctc 209  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||||||    
T  30986830 ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctc 30986732  T
Q  210 aacaaataaggggaaaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatt 307  Q
    |||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30986731 aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatt 30986632  T
Q  308 accactctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta 389  Q
    ||||||||||||| ||||||| |||||    ||| |||| | |||||||||||||||  ||||||||||| || ||||||||||    
T  30986631 accactctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 160 - 402
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
Q  160 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta 258  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  259 agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa 358  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    ||| |  | | |||||||||    
T  30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa 30966729  T
Q  359 acctcac-aggagaaactaatt-tttctctctatattttttctctc 402  Q
    ||||||| || |||||||| || |||||||||||||||||||||||    
T  30966728 acctcacaagtagaaactatttctttctctctatattttttctctc 30966683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 30967809 - 30967674
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |  || |||||||||||||||||||||||||||    
T  30967809 acagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaagg-ctctgataccactgttaggtaccagag 30967711  T
Q  129 taacaaaatattatcacgcagctaaaataagagacga 165  Q
    |||||||||||||||| ||||||||||||||||||||    
T  30967710 taacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 119 - 305
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
Q  119 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 218  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  219 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 305  Q
     |||||||| | | ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966762 agggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
Q  133 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 231  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| ||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaaaacca 23012617  T
Q  232 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 282  Q
      |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012618 -tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 520
Target Start/End: Complemental strand, 30986478 - 30986430
Alignment:
Q  472 catgctatttatactagtgaaagagtcatgccccaaccaatttcattta 520  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  30986478 catgctatttatattagtgaaagagccatgccccaaccaattacattta 30986430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 511
Target Start/End: Complemental strand, 30966605 - 30966566
Alignment:
Q  472 catgctatttatactagtgaaagagtcatgccccaaccaa 511  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  30966605 catgctatttatactagtgaaagagccatgccccaaccaa 30966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 123 - 521
Target Start/End: Original strand, 5198664 - 5199062
Alignment:
Q  123 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  223 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  5198764 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttat 5198863  T
Q  323 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttac 422  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  5198864 aaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttac 5198963  T
Q  423 ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaatttcatttat 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5198964 ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 825880 - 825632
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagag 128  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  825880 acagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcgg-ctctgataccactgttaggtaccagag 825782  T
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  825781 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaa 825682  T
Q  228 accacggggcaagagtagagaactttcactaagtggaagaaattacagga 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825681 accacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 35 - 403
Target Start/End: Complemental strand, 15603272 - 15602905
Alignment:
Q  35 catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagagtaacaa 134  Q
    ||||||||||| |||||||||||||||| ||||| |  || ||||||||||  |||||||||  |  |||||||| ||||||| |||   ||||||| ||    
T  15603272 catactaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatga-ctctgatagcactgttgggtgtgagagtaagaa 15603174  T
Q  135 aatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacgg 234  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603173 aatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacgg 15603074  T
Q  235 ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 334  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| |||||||||||||    
T  15603073 ggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaat 15602974  T
Q  335 acaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca 403  Q
    || |||||||||  |||| ||||||||||| || | || ||||||||||| ||||||||||| ||||||    
T  15602973 actaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 114 - 277
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 830353  T
Q  214 aataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 277  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830352 aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 121 - 381
Target Start/End: Complemental strand, 28716070 - 28715816
Alignment:
Q  121 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 220  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg 28715972  T
Q  221 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt 320  Q
    ||||||| ||||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | || |    
T  28715971 ggaaaaa-ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcct 28715873  T
Q  321 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt 381  Q
    ||||||||||||||    |||||||| | ||||||||||||| ||| ||||||||| ||||    
T  28715872 ataaataggagaat----actaacactacctaggagaaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 123 - 405
Target Start/End: Original strand, 30396920 - 30397191
Alignment:
Q  123 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 222  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||     
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataaggga 30397017  T
Q  223 aaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctta 321  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| |||| | ||     
T  30397018 aaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt- 30397115  T
Q  322 taaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 405  Q
     |||||||||||||  |||        ||||||||||| ||||||||||||||||  ||| ||||||||||| || ||||||||    
T  30397116 gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 830291 - 830209
Alignment:
Q  327 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat 407  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 830209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 114 - 274
Target Start/End: Original strand, 31592910 - 31593068
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||| |||| || ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |    
T  31592910 tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata 31593009  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 274  Q
    ||||| |  ||||||||||  |  ||||||||||||||||||||||  | |||||||||||    
T  31593010 aataa-gaaaaaaaaccac-agataagagtagagaactttcactaaccgaaagaaattaca 31593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 825635 - 825553
Alignment:
Q  327 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat 407  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactat 825553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 183 - 334
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
Q  183 acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 282  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||   |  ||  || |||| |||| ||||| ||||||||||||||||||||||| ||    
T  13843865 acacaatattt-acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct 13843962  T
Q  283 ctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 334  Q
     | |||||||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843963 ttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 114 - 336
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||| ||||||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  ||||||||    
T  13840240 tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaaca 13840336  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact 313  Q
    || |||||| ||||  || || ||||||||||| || ||| || ||||  || ||||||||  ||||||||||||||| ||||||||||||||||| | |    
T  13840337 aacaagggggaaaa--catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaatt 13840433  T
Q  314 ctctcttataaataggagaatac 336  Q
    |||||||| |||||  |||||||    
T  13840434 ctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
Q  209 caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 308  Q
    ||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||    
T  8004292 caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta 8004194  T
Q  309 ccactctctcttataaataggagaatac 336  Q
     |||||||||||||||||||||||||||    
T  8004193 -cactctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  134 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 233  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  234 gggcaagagtagagaa 249  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 521
Target Start/End: Complemental strand, 28715747 - 28715682
Alignment:
Q  455 tagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaatttcatttat 521  Q
    |||||||||||||| | |||||||||||||  |||||||||  ||||||||||||| || |||||||    
T  28715747 tagaatggtgcaagag-catgctatttataggagtgaaagaaccatgccccaaccatttacatttat 28715682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  129 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 178  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
Q  175 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 274  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| |||||||| |||  |  |||||||| |    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata 42117779  T
Q  275 ggacctctct 284  Q
     |||||||||    
T  42117778 agacctctct 42117769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 119 - 405
Target Start/End: Original strand, 16183636 - 16183913
Alignment:
Q  119 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  219 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| ||||||    
T  16183736 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctct 16183834  T
Q  318 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 405  Q
    |||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  16183835 ctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 16183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 114 - 406
Target Start/End: Complemental strand, 30235339 - 30235043
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||| |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||     
T  30235339 tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacg 30235241  T
Q  214 aataagggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaaatacaaggagagtacaattacca 311  Q
    ||||||||| |||||||||||||  ||||||||| |||||||| ||| | |||||||||||||||||||||| |||  || |||||||||||||||||||    
T  30235240 aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacca 30235141  T
Q  312 ctctctcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcacta 406  Q
    |||||||||||||||||||||||||||  |||||||| |  || |||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  30235140 ctctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcacta 30235043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 100 - 336
Target Start/End: Original strand, 8139950 - 8140183
Alignment:
Q  100 ggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtg 199  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||| |||| |||    
T  8139950 ggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaata-tttatgtg 8140048  T
Q  200 gaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggaga 299  Q
    |||||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| ||||||||||||    
T  8140049 gaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggaga 8140148  T
Q  300 gtacaattaccactctctcttataaataggagaatac 336  Q
    |   ||||||| |||||||||  ||||||||||||||    
T  8140149 gacaaattacc-ctctctctt-gaaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 8138384 - 8138645
Alignment:
Q  33 agcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgttaggtaccagagtaac 132  Q
    ||||||||||||||||||||||||||| || ||||     | || |||||||  | ||||||||  || |||| ||||||||||| |||| ||||||| |    
T  8138384 agcatactaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatgg-ctctaataccactgttgggtagcagagtatc 8138478  T
Q  133 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 232  Q
    ||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| || || | |||||||||||| |||||| ||||||| ||||||||    
T  8138479 aaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaaggggagaaaaccac 8138577  T
Q  233 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 300  Q
    | ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138578 gaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 25441160 - 25441073
Alignment:
Q  29 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagggggctctgataccactgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||   ||||||||||||||||||    
T  25441160 acagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatca-atggctctgataccactgtt 25441073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
Q  127 agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 225  Q
    ||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| ||||||||||||||||||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa 5102703  T
Q  226 aaaccacggggcaagagtagagaactttcactaagtggaagaaatta 272  Q
    || ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102704 aa-ccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 36528415 - 36528529
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||| |||| |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||     
T  36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg 36528513  T
Q  214 aataaggggaaaaaac 229  Q
    |||||||  |||||||    
T  36528514 aataaggaaaaaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 30234974 - 30234924
Alignment:
Q  471 acatgctatttatactagtgaaagagtcatgccccaaccaatttcatttat 521  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  30234974 acatgctatttatactagtgaaagagccatgccccaaccaattacatttat 30234924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 180; Significance: 7e-97; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 114 - 405
Target Start/End: Original strand, 27226 - 27508
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca 27325  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   ||||||||     
T  27326 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca- 27424  T
Q  313 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 405  Q
    ||||||||  ||||||| |||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  27425 tctctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 114 - 405
Target Start/End: Complemental strand, 46191546 - 46191266
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaaca 46191449  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccac 312  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||| |    
T  46191448 aataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-c 46191350  T
Q  313 tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 405  Q
    ||||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  46191349 tctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 119 - 300
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
Q  119 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 218  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa 30697218  T
Q  219 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 300  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697219 ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 114 - 300
Target Start/End: Complemental strand, 4130401 - 4130215
Alignment:
Q  114 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 213  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  4130401 tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaaca 4130303  T
Q  214 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 300  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130302 aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
Q  256 ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 336  Q
    ||||||||||||||||| |  ||||||| ||||| | |||||||| ||||||| || |||||||| | |||||||||||||    
T  30674787 ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac 30674865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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