View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5258_high_7 (Length: 597)

Name: NF5258_high_7
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5258_high_7
NF5258_high_7
[»] chr3 (11 HSPs)
chr3 (290-473)||(37119069-37119252)
chr3 (1-137)||(37119374-37119510)
chr3 (167-262)||(37119249-37119344)
chr3 (1-132)||(37131101-37131232)
chr3 (1-126)||(37135164-37135289)
chr3 (1-108)||(37125064-37125171)
chr3 (182-231)||(37124937-37124986)
chr3 (213-272)||(37135385-37135444)
chr3 (481-579)||(4575800-4575898)
chr3 (481-579)||(3590953-3591051)
chr3 (481-579)||(9786740-9786838)
[»] chr5 (1 HSPs)
chr5 (1-138)||(1193926-1194063)
[»] chr4 (5 HSPs)
chr4 (481-579)||(13090676-13090774)
chr4 (487-579)||(44743559-44743651)
chr4 (481-575)||(22590791-22590885)
chr4 (488-575)||(4527746-4527833)
chr4 (481-579)||(14642103-14642201)
[»] chr7 (1 HSPs)
chr7 (1-138)||(31296978-31297115)
[»] chr6 (1 HSPs)
chr6 (481-579)||(26333513-26333610)
[»] chr1 (3 HSPs)
chr1 (481-579)||(6578282-6578380)
chr1 (1-126)||(20269096-20269221)
chr1 (213-272)||(20269317-20269376)
[»] chr2 (1 HSPs)
chr2 (481-579)||(7231603-7231701)
[»] scaffold0005 (1 HSPs)
scaffold0005 (481-579)||(175091-175189)
[»] chr8 (1 HSPs)
chr8 (526-580)||(29565395-29565449)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 9e-90; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 290 - 473
Target Start/End: Complemental strand, 37119252 - 37119069
Alignment:
Q  290 atgtatggtgtgagcatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggatattttgtattttttcttcgtatg 389  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  37119252 atgtatggtgtgaccatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggattttttgcattttttcttcgtatg 37119153  T
Q  390 ttattagcaaagtaggtagtacttgaaaaaaggcagtacgtgagtacaaaattgagaaagacagttctgaaatcttaattattg 473  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119152 ttattagcaaagtaggcagtacttgaaaaaaggcagtacgtgagtacaaaattgagaaagacagttctgaaatcttaattattg 37119069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 37119510 - 37119374
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119510 ggagtggaaagtgcagctgtaaaaggagatagcaaggatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 37119411  T
Q  101 aattctgtcatgcagatttggtgagtgttggtgaagt 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  37119410 aattctgtcatgcagatttggtgagtgttggtgaagt 37119374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 37119344 - 37119249
Alignment:
Q  167 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37119344 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatcatgtgaatgt 37119249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 37131232 - 37131101
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||| ||| || |||||||| ||||||| | ||| ||||||||||||||||| ||||||||||||||  ||| || |||||||| ||| || |||||||    
T  37131232 ggagtagaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgctaagaaaga 37131133  T
Q  101 aattctgtcatgcagatttggtgagtgttggt 132  Q
    |||||||||||||||| |||||||||||||||    
T  37131132 aattctgtcatgcagaattggtgagtgttggt 37131101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 37135164 - 37135289
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||| || || ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |||||||    
T  37135164 ggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaagaaaga 37135263  T
Q  101 aattctgtcatgcagatttggtgagt 126  Q
    ||||| || |||||||||||||||||    
T  37135264 aattcggttatgcagatttggtgagt 37135289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 37125171 - 37125064
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||| ||||| || |||||| |||||||| ||| || |||||||||||| || |||||||    
T  37125171 ggagtggaaagtgcagctatacaaggacatagcaaggataaaatggaggttacaggagaataaatagactcagttagactcacatgtctgctaagaaaga 37125072  T
Q  101 aattctgt 108  Q
    ||||||||    
T  37125071 aattctgt 37125064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 37124986 - 37124937
Alignment:
Q  182 cttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagg 231  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  37124986 cttgtgtagctagtattcctcattaccctgtccctgtgtgtgagataagg 37124937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 37135385 - 37135444
Alignment:
Q  213 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 272  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  37135385 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 37135444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 579
Target Start/End: Original strand, 4575800 - 4575898
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||||||||||||||||| |||||| ||||||||||| || ||||| ||||||    
T  4575800 aatttattctgaacatttcgattagtttcactatgtgcgcaagtccaaagaaacataacaagtgtctccaatgatgtcatttctttagatggatgtaac 4575898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 579
Target Start/End: Complemental strand, 3591051 - 3590953
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    ||||||||||| | ||||| |||| |||| ||||| ||| |||| ||||||||||||   |  || ||||| |||||||||||||| ||||| ||||||    
T  3591051 aatttattttggacatttcgattagtctcactatgtgcacaactccaaagaaacatagtcaaagcttccaacgatgtcatttcattagatggatgtaac 3590953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 579
Target Start/End: Original strand, 9786740 - 9786838
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    ||||||||||| | ||||| |||| |||| || || ||| |||| ||||||||||||   |  |||||||| |||||||||||||| ||||| ||||||    
T  9786740 aatttattttggacatttcgattagtctcactgtgtgcacaactccaaagaaacatagtcaaagcctccaacgatgtcatttcattagatggatgtaac 9786838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 1193926 - 1194063
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| ||| || |||||||| ||| || |||||||    
T  1193926 ggagtggaaagtgcagctataaaaggagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagactcacatttctgctaagaaaga 1194025  T
Q  101 aattctgtcatgcagatttggtgagtgttggtgaagtg 138  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1194026 aattctgtcatgcagaattggtgagtgttggtgaagtg 1194063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 481 - 579
Target Start/End: Complemental strand, 13090774 - 13090676
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13090774 aatttattttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 13090676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 487 - 579
Target Start/End: Complemental strand, 44743651 - 44743559
Alignment:
Q  487 ttttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44743651 ttttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 44743559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 481 - 575
Target Start/End: Complemental strand, 22590885 - 22590791
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtg 575  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22590885 aatttattttgaatatttctattagtctcgctatgtgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcgtttgatgggtg 22590791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 488 - 575
Target Start/End: Original strand, 4527746 - 4527833
Alignment:
Q  488 tttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtg 575  Q
    ||||||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4527746 tttgaatgtttttattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctctaaggatgtcatttcatttgatgggtg 4527833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 579
Target Start/End: Complemental strand, 14642201 - 14642103
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||    
T  14642201 aatttattctgaacatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaac 14642103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 31297115 - 31296978
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||| ||| || | |||||| ||| || |||||||    
T  31297115 ggagtggaaagtgcagctataaaagcagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagagtcacatctctgctaagaaaga 31297016  T
Q  101 aattctgtcatgcagatttggtgagtgttggtgaagtg 138  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  31297015 aattatgtcatgcagaattggtgagtgttggtgaagtg 31296978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 481 - 579
Target Start/End: Original strand, 26333513 - 26333610
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    |||||||||||||| ||||||||| |||||||||||||| |||  ||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  26333513 aatttattttgaatgtttctattagtctcgctatgcgcacaaccccaaagaaacattacaagtgcctccaaggatgtca-ttcatttgatgggtgtaac 26333610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 481 - 579
Target Start/End: Original strand, 6578282 - 6578380
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    |||||||||||||| ||||||||| |||| |||| |||| |||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||    
T  6578282 aatttattttgaatgtttctattagtctcactatacgcacaactccaaagaaatataataagtgcctccaagaatgtcatttcatttgatgggtgtaac 6578380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 20269096 - 20269221
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |||||||    
T  20269096 ggagtggaaggtgcaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaagaaaga 20269195  T
Q  101 aattctgtcatgcagatttggtgagt 126  Q
    ||||| || |||||||||||||||||    
T  20269196 aattcggttatgcagatttggtgagt 20269221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 20269317 - 20269376
Alignment:
Q  213 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 272  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  20269317 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 20269376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 481 - 579
Target Start/End: Complemental strand, 7231701 - 7231603
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    |||||||| |||| |||||||||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||    
T  7231701 aatttattctgaacatttctattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaac 7231603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 579
Target Start/End: Original strand, 175091 - 175189
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 579  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||    
T  175091 aatttattctgaacatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaac 175189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 29565449 - 29565395
Alignment:
Q  526 caaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaact 580  Q
    ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  29565449 caaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaact 29565395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University