View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_8 (Length: 560)
Name: NF5258_high_8
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 14 - 541
Target Start/End: Original strand, 48501382 - 48501909
Alignment:
| Q |
14 |
caaaggagacgaatggtgaaaacaaggttgaagaaaatggagagagattctggtgtgtgcgagtctatgatccatgcaatgggctctggtttgagttttt |
113 |
Q |
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| T |
48501382 |
caaaagagacgaatggtgaaaacaaggttgaagaaaatggagagagattctggtgtgtgcgagtctatgatccatgcaatgggctctggtttgagttttt |
48501481 |
T |
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| Q |
114 |
gaagctgggatctagggcaagtgctatcgtgcgctgtgggtgagttggatatgatttcttggaggagttggagaaggagtgggaggaaattagggttttc |
213 |
Q |
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| T |
48501482 |
gaagctgggatctagggcaagtgctatcgtgcgctgtgggtgagttggatatgatttcttggaggagttggagaaggagtgggaggaaattagggttttc |
48501581 |
T |
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| Q |
214 |
tgaagagagtgtgcatttctcggaaatccaaagaggtttttgagtgttgaatggatggaagccttgtaagaataccatgaaggttactaaggcttctgag |
313 |
Q |
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| T |
48501582 |
tgaagagagtgtgcatttctcggaaatccaaagaggtttttgagtgttgaatggatggaagccttgtaagaataccatgaaggttactaaggcttctgag |
48501681 |
T |
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| Q |
314 |
tctgacccaaaagttcgctctgctttgagataaatagaacgagttgaatcgttttgtccatctctagcaagttcgaactttggtggtgagtcaaactcat |
413 |
Q |
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| T |
48501682 |
tctgacccagaagttcgctctgctttgagataaatagaacgagttgaatcgttatgtccatctctagcaagttcgaactttggtggtgagtcaaactcat |
48501781 |
T |
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| Q |
414 |
aattcctccactctactgagttggggagttcagatatccatgaccaaatatccatattgatattgtatggtgtgttgttaacggaatatggattgaaaga |
513 |
Q |
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| T |
48501782 |
aattcctccactctactgagttggggagttcagatatccatgaccaaatatccatattgatattgtatggtgtgttgttaacggaatatggattgaaaga |
48501881 |
T |
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| Q |
514 |
ggattgagttaatggggttagttttaag |
541 |
Q |
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| T |
48501882 |
ggattgagttaatggggttagttttaag |
48501909 |
T |
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