View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_10 (Length: 529)
Name: NF5258_low_10
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 486585 - 486076
Alignment:
| Q |
1 |
ggctatagattgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgagggtgtacc |
100 |
Q |
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| T |
486585 |
ggctatagattgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgagggtgtacc |
486486 |
T |
|
| Q |
101 |
ttaagataaaatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaagcttaaaggttcctaagtgggccctca |
200 |
Q |
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| T |
486485 |
ttaagataaaatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaagcttaaaggttcctaagtgggccctca |
486386 |
T |
|
| Q |
201 |
cagttttcattgcttctttcacaagcttaaatggatcattacccgcgtgaaggtaaacaacagcgttgtatcgagagtcagttactaaagttgaactact |
300 |
Q |
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| T |
486385 |
cagttttcattgcttctttcacaagcttaaatggatcattacccgcgtgaaggtaaacaacagcgttgtatcgagagtcagttactaaagttgaactact |
486286 |
T |
|
| Q |
301 |
ctcgacacagacagcaacgttgtcgtcttcaccgggttgtaaagaagcacggaaagacccttctactattggaagtaatagaacatagggtcgaccagag |
400 |
Q |
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| T |
486285 |
ctcgacacagacagcaacgttgtcgtcatcaccgggttgtaaagaagctcggaaagacccttctattattggaagtaatagaacatagggtcgaccagag |
486186 |
T |
|
| Q |
401 |
tttggatctgaacccggatttggatccgagttctggagcatgaggaattgggtctcagtttctaggtctttgccatttgaaccggtccaaagagtggtcc |
500 |
Q |
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| T |
486185 |
tttggatctgaacccggatttggatccgagttctggagcatgaggaattgggtctcggtttctaagtctttgccatttgaaccggtccaaagagtggtcc |
486086 |
T |
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| Q |
501 |
accacacttt |
510 |
Q |
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| T |
486085 |
accacacttt |
486076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 43639795 - 43639959
Alignment:
| Q |
10 |
ttgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgagggtgtaccttaagataa |
109 |
Q |
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|||||||||||||||||| | ||||| | || ||||| ||||| || |||| ||||||||||||| ||||||||||||| |||||||| ||| |
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| T |
43639795 |
ttgccaaccatcatcaatgattacaaaacttggaggacacccaccttctactaaacccttaacaccttctttcactccttgagggtccaccttaaggtaa |
43639894 |
T |
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| Q |
110 |
aatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaag |
174 |
Q |
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| T |
43639895 |
aatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttcttctagaag |
43639959 |
T |
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