View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_11 (Length: 502)
Name: NF5258_low_11
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 430
Target Start/End: Original strand, 4895145 - 4895566
Alignment:
| Q |
7 |
gagagatgaaaaacttacacgaattagtccaaacgannnnnnnnnngcagatgggaatggggtacaacttgaccagaaacgatctagtgaaaaaactacg |
106 |
Q |
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| T |
4895145 |
gagaaatgaaaaacttacacgaattagtccaaacgattttttttttgcagatgggaatagggtacaacttgaccagaaacgatctagtgaaaaaactacg |
4895244 |
T |
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| Q |
107 |
tgtggctgcattgagagccatgtcataaatgtggtcccaatggtagatgcaacaataatcatattatacgaccatggacgtaccaaacactacttaacta |
206 |
Q |
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| T |
4895245 |
tgtggctgcattgagagccatgtcataaatgtggtcccaatggtagatgcaacaataatcatatgatatgtccatggacgtaccaaacactacttaacta |
4895344 |
T |
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| Q |
207 |
ataatctgattcaaatgctaatggcaaatctaaatcaacgaatgatatatacaatgttcgtgtcatcttggtcctacataatgacttctgaagaatagag |
306 |
Q |
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| T |
4895345 |
ataatctgattcaaatgctaatggcaaatctaaatcaacgaatg--atatgcaatgttcgtgtcatcttggtcctacataatgacttctgaagaatagag |
4895442 |
T |
|
| Q |
307 |
ctccatgaaccattgattttatcatcagtttttcacatgtgcggaagtttttcattttatgtaccattcacacgtaacgtgaataaagttctgtactatt |
406 |
Q |
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| T |
4895443 |
ctccatgaaccattgattttatcatcagtttttcacatgtgcggaagtttttcattttatgtaccattcacacgtaacgtgaataaagttctgtactatt |
4895542 |
T |
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| Q |
407 |
cacacgtaacatgaataaagtgta |
430 |
Q |
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| T |
4895543 |
cacacgtaacatgaataaagtgta |
4895566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 4895585 - 4895653
Alignment:
| Q |
417 |
atgaataaagtgtactattcacacgtaagatgagtaaagtttgagaagatgaataaagtgtactattca |
485 |
Q |
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| T |
4895585 |
atgaataaagtgtactattcacacgtaagatgagtaaagtttgagaagatgaataaagtgtactattca |
4895653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 485
Target Start/End: Original strand, 4895566 - 4895605
Alignment:
| Q |
446 |
atgagtaaagtttgagaagatgaataaagtgtactattca |
485 |
Q |
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| T |
4895566 |
atgaataaagtttgagaagatgaataaagtgtactattca |
4895605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 4895502 - 4895563
Alignment:
| Q |
398 |
tgtactattcacacgtaacatgaataaagt---gtactattcacacgtaagatgagtaaagt |
456 |
Q |
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| T |
4895502 |
tgtaccattcacacgtaacgtgaataaagttctgtactattcacacgtaacatgaataaagt |
4895563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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