View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_15 (Length: 475)
Name: NF5258_low_15
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 31863532 - 31863868
Alignment:
| Q |
1 |
tcattcacaatttcctgtgactgtacctacacagatattacctcataatatctctgactcttcttctggttcttttcaatatagtgaatttcagtcatgg |
100 |
Q |
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| T |
31863532 |
tcattcacaatttcctgtgactgtacctacacagatattacctcataatatctctgactcttcttctggttcttttcaatatagtgaatttcagtcatgg |
31863631 |
T |
|
| Q |
101 |
aatttacctattgaaggtagtgttgaagatagagcagcaagtgcttccaagagtcatagtcaagcagagaaaagacgtagagacaggattaatacacagc |
200 |
Q |
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| T |
31863632 |
aatttacctattgaaggtagtgttgaagatagagcagcaagtgcttccaagagtcatagtcaagcagagaaaagacgtagagacaggattaatacacagc |
31863731 |
T |
|
| Q |
201 |
ttgctaatcttagaaaacttattcctaagtctgataaggtaaacttattcatgtttgtcacatttaatttaattatatagtatagtattagtgtattact |
300 |
Q |
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| T |
31863732 |
ttgctaatcttagaaaacttattcccaagtctgataaggtaaacttattcatgtttgtcacatttaatttaattatatagtatagtattagtgtattact |
31863831 |
T |
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| Q |
301 |
atttgaagcttagagtttgttacatatttcatgcaag |
337 |
Q |
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| T |
31863832 |
atttgaagcttagagtttgttacatatttcatgcaag |
31863868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 367 - 465
Target Start/End: Original strand, 31863865 - 31863963
Alignment:
| Q |
367 |
caagtgataagatgttgcattcattcaattcaggctttgaagaataagtgtcctattgtgattttgacaaaagctatcttttgaaacttccatagaatt |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31863865 |
caagtgataagatgttgcattcattcaattcaggctttgaagaataagtgtgctattgtgattttgacaaaagctatcttttgaaacttccataaaatt |
31863963 |
T |
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