View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_17 (Length: 455)
Name: NF5258_low_17
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 67 - 252
Target Start/End: Complemental strand, 44652287 - 44652104
Alignment:
| Q |
67 |
tatagaatctacacgtgcgttcatttttatttgttaatttannnnnnnnaaagattgttaagttgaaagcaacattaatattatttggctaaattaaatg |
166 |
Q |
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| T |
44652287 |
tatagaatctacacgtgcgttcatttttatttgttaattt--tttttttaaagattgttaagttgaaagcaacattaatattatttggctaaattaaatg |
44652190 |
T |
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| Q |
167 |
tttagtctcttaactaattttctagttttattttggtctcatcactaattattcttatgtttagatactttaaatgcacttctatt |
252 |
Q |
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| T |
44652189 |
tttaatctcttaactaattttctagttttattttggtttcatcactaattattcttatgtttagatactttaaatgcacttctatt |
44652104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 306 - 435
Target Start/End: Complemental strand, 44651918 - 44651789
Alignment:
| Q |
306 |
caatattatagataatccatcataaacctcctaaaataaattatctaagtgtcaaaatagtgtgttagaggatgtgatgctaacattttccttattctta |
405 |
Q |
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| T |
44651918 |
caatattataggtgatccatcataaacctcataaaaaaaattatctaagtgtcaaaatagtgtgttagaggatgtgatgctaacattttccttattctta |
44651819 |
T |
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| Q |
406 |
tgtttgtggagtgttagcaggatgtgatgt |
435 |
Q |
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| T |
44651818 |
tgtttgtggagtgttagcaagatgtgatgt |
44651789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 44652107 - 44652055
Alignment:
| Q |
267 |
tattccgttaatttaaacttcaaatattgcaaggtaaatcaatattatagata |
319 |
Q |
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| T |
44652107 |
tattccgttaatttaaacttcaaatattgcaaagtaaaccaatattatagata |
44652055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 44652476 - 44652423
Alignment:
| Q |
10 |
atgaagaaaacccaaagtgtgccttattcat-attacccttactacaatcttta |
62 |
Q |
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| T |
44652476 |
atgaagaaaatccaaagtgtgccttgttcataattacccttgctacgatcttta |
44652423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 3880647 - 3880696
Alignment:
| Q |
156 |
taaattaaatgtttagtctcttaactaattttctagttttattttggtct |
205 |
Q |
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| T |
3880647 |
taaattagatatttagtctcttagctaattttctagtttcattttggtct |
3880696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 2504601 - 2504666
Alignment:
| Q |
150 |
tttggctaaattaaatgtttagtctcttaactaattttctagttttattttggtctcatcactaatta |
217 |
Q |
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| T |
2504601 |
tttggctaaattacat--ttagtcccttaactaattttctaattttattttaatctcataactaatta |
2504666 |
T |
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