View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5258_low_19 (Length: 408)
Name: NF5258_low_19
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 33715956 - 33716332
Alignment:
| Q |
19 |
aacaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctg |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
33715956 |
aacaggttcaacatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctaactcaggaaatttgacatctctg |
33716055 |
T |
|
| Q |
119 |
ctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33716056 |
ctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaagttttaggttctgctttcttcttgattt |
33716155 |
T |
|
| Q |
219 |
gttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatc |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716156 |
gttcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatc |
33716255 |
T |
|
| Q |
319 |
aacttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33716256 |
aacttgtgcttttacttctgtaacatcctattttgattccaggctttcccctggaacaggttctttgacagattttg |
33716332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 22 - 394
Target Start/End: Complemental strand, 27711897 - 27711524
Alignment:
| Q |
22 |
aggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgcta |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
27711897 |
aggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctgactcaagaaatttgacatctatgcta |
27711798 |
T |
|
| Q |
122 |
acaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttgtt |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
27711797 |
acaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctataacctacaaaaatttcaggttctgttttcttcttgatttgta |
27711698 |
T |
|
| Q |
222 |
caaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaac |
321 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27711697 |
caaggacaacatccacagcagaagatttaggcttgcttttaaaactgttaataacgttattggacaggcctttattcatttgttcccatatggcatcaac |
27711598 |
T |
|
| Q |
322 |
ttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttg |
394 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
27711597 |
ttgtgcttttacttcagtaacatcctgttttggttccaggatttcccctggaacatgttctttgacagattttg |
27711524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 28697459 - 28697835
Alignment:
| Q |
19 |
aacaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
28697459 |
aacaggttcatcatcaacatcttcattctcctcctgaaatttaaacttctcacaatcttcccaattccaacaatctgactcaagaaatttgacatctctg |
28697558 |
T |
|
| Q |
119 |
ctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgattt |
218 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
28697559 |
ctaacaattattttattgctttgtggaagatagattctatagacttttgaagatgagttatagcctacaaaaatttcaggttctgttttcttcttgattt |
28697658 |
T |
|
| Q |
219 |
gttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatc |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28697659 |
gttcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgttaagaacgttattggacactcctttgttcatttgttcccatatggcatc |
28697758 |
T |
|
| Q |
319 |
aacttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttg |
394 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| |||||||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28697759 |
aacttgtgcttttacttcagtaacatcctgttttagttccaggatttcccctgaaacaggttctttgacagattttg |
28697835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 628145 - 627754
Alignment:
| Q |
19 |
aacaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctg |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||| |
|
|
| T |
628145 |
aacaggttcaccatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaaatatttgactcaagaaatttgacatctctg |
628046 |
T |
|
| Q |
119 |
ctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgattt |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
628045 |
ctaacaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctatagcctacaaaaatttcaggttctgttttcttcttgattt |
627946 |
T |
|
| Q |
219 |
gttcaaggacaacatcgacaacagaagatt---------------taggcttgcttttaaaactgctaataacgttattggacactcctttattcatttg |
303 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
627945 |
gttcaaggacaacatccacatcagaagattttgatcttgattctataggcttgcttttaaaactgttaataacgttattggacactcctttattcatttg |
627846 |
T |
|
| Q |
304 |
ttcccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
627845 |
ttcccatatggcatcaacttgtgcttttacttcagtaacatcctgttttagtttcaggatttcccctgaaacaggttctttgacagattttg |
627754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 50793988 - 50793895
Alignment:
| Q |
244 |
agatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttct |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50793988 |
agatttaggcttgcttttaaaactgctaataactttattggacacacctttattcatttgttcccatatggcatcaacttcagcttttacttct |
50793895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 50793815 - 50793758
Alignment:
| Q |
338 |
gtaacatcctattttggttccaggctt-tccctggaacaggttctttgacagattttg |
394 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50793815 |
gtaacatcctgttttggttccaggcttgtccctggaacaggttctttgacagattttg |
50793758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 50795050 - 50795007
Alignment:
| Q |
202 |
tgctttcttcttgatttgttcaaggacaacatcgacaacagaag |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
50795050 |
tgctttcttcttgatttgttcaaggacagcatccacagcagaag |
50795007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University