View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5258_low_2 (Length: 768)

Name: NF5258_low_2
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5258_low_2
NF5258_low_2
[»] chr8 (1 HSPs)
chr8 (19-752)||(25116309-25117043)


Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 19 - 752
Target Start/End: Complemental strand, 25117043 - 25116309
Alignment:
Q  19 aatgctacctaaagataaagcgacgcaaaagaaatataacataaaatcatattaacttacttttatttaagacatcagcaaataatccttctgcacaaca 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  25117043 aatgctacctaaagataaagcgacgcaaaaaaaatataacataaaatcatattaacttacttttatttaagacatgaccaaataatccttctgcataaca 25116944  T
Q  119 acacttgattagaaatgataataaagggagaaaaaattcgactttgtattgatgtgaaaattggttgtaacattaccgttggattcacattgtgtcaaaa 218  Q
    |||||| ||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25116943 acactttattagaaataacaataaagggagaaaaaattagactttatattgatgtgaaaattggttgtaacattaccgttggattcgcattgtgtcaaaa 25116844  T
Q  219 actcgttaaatccctccacaagatcggagtgttttcccaacaaatcgcctacctgaatgcaacatgaattcttctccgtttcagtatttt-aacataatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  25116843 actcgttaaatccctccacaagatcggagtgttttcccaacaaatcgcctacctgaatgcaacatgaattcttctccgttacagtatttttaacataatt 25116744  T
Q  318 tttgtattaaagtttaatgttcaatgcaagccatattcaattcaagagttataggatgtgacagaaaatccaaaaatgtaacttctgaaaatttggatgt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25116743 tttgtattaaagtttaatgttcaatgcaagccatattcaattcaagagttataggatgtgacagaaaatcaaaaaatgtaacttctgaaaatttggatgt 25116644  T
Q  418 ataaacaacattaccattgtttgtagttcttctcttgtaattgttcccattctgtagctatgtagggacttctcaaatttttggtaatcctcgagtattc 517  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25116643 ataaacaatattaccattttttgtagttcttctcttgtaattgttcccattctgtagctatgtagggacttctcaaatttttggtaatcctcgagtattc 25116544  T
Q  518 ctaacctctctgtgactttgttcaggtaagaaaacgcttcactcgacataactgaaaatgccatgttttaaagtaataaacaaatcgtacttaaatgagt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || |||||||||    
T  25116543 ctaacctctctgtgactttgttcaggtaagaaaacgcttcactcgacataactgaaaatgaaatattttaaagtaataaacaaatcgaacgtaaatgagt 25116444  T
Q  618 tcactataataatcatgtaaccttcacctgtatgacactccnnnnnnncgtcacgcttctcatttgcactcatcgaacctttttcaatttctggatcagg 717  Q
    |||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25116443 tcactataatgatcatgtaaccttcacctgtatgacactcctttttttcgtcacgcttctcatttgcactcatcgaacctttgtcaatttctggatcagg 25116344  T
Q  718 atgttcgacaatgaggtcgcgatcacctttcttat 752  Q
    ||||||||||||||||||||||| |||||||||||    
T  25116343 atgttcgacaatgaggtcgcgattacctttcttat 25116309  T

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