View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_20 (Length: 404)
Name: NF5258_low_20
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 50 - 386
Target Start/End: Complemental strand, 36067964 - 36067630
Alignment:
| Q |
50 |
gtcagatacactaacatcttaagtatagtttgtataaatctttcgtaataataatgattggatgctatactaaaaggtggtggttgatttcattatatgt |
149 |
Q |
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| T |
36067964 |
gtcagatacactaacatcttaagta--gtttgtataaatctttcgtaataataatgattggatgctatactaaaaggtggtggttgatttcattatatgt |
36067867 |
T |
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| Q |
150 |
gtaggaatcattcggaaaacaaaaactataagagaatgtcttcatcgtttctgcgaagagtgcatagacaagtgcatgcgctttgggtttttccttgaac |
249 |
Q |
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| T |
36067866 |
gtaggaatcattcggaaaacaaaaactataagagaatgtctgcatcgtttctgcgaagagtgcataaacaagtgcatgcgctttgggtttttccttgaac |
36067767 |
T |
|
| Q |
250 |
ttccaccatatttacttatcaatattttacatatttttagtttgaactgtgttgattatttagttgtaatatattttcttgtcatcaattgcagaaaaaa |
349 |
Q |
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| T |
36067766 |
ttccaccatatttacttatcaatattttacatatttttagtttgaactgtgttgattatttagttgtaatatattttcttgtcatcaattgcagaaaaaa |
36067667 |
T |
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| Q |
350 |
tgaatgtcctgtttgtcgcacacattgtcctgaccaa |
386 |
Q |
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| T |
36067666 |
tgaatgtcctgtttgtcgcacacattgtcctgaccaa |
36067630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 35152179 - 35152099
Alignment:
| Q |
213 |
atagacaagtgcatgcgctttgggtttttccttgaacttccaccatatttacttatcaatattttacatatttttagtttg |
293 |
Q |
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| T |
35152179 |
atagacaagtacaagaactttgggtttgcccttaaacttccaccatctttacttatcaatatttcacatatttttagtttg |
35152099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 21548085 - 21547987
Alignment:
| Q |
131 |
ggttgatttcattatatgtgtaggaatcattcggaaaacaaaaactataagagaatgtcttcatcgtttctgcgaagagtgcatagacaagtgcatgcg |
229 |
Q |
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| T |
21548085 |
ggttaatttgattatatgtgtaggcatcattcgaaaaacaagaacttcaatggaatgcatgcatcgcttttgcaaagtgtgcatagacaagtgcatgcg |
21547987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 35139858 - 35139820
Alignment:
| Q |
133 |
ttgatttcattatatgtgtaggaatcattcggaaaacaa |
171 |
Q |
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| T |
35139858 |
ttgatttcattatatgtgtaggcatcattcgaaaaacaa |
35139820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 101 - 306
Target Start/End: Complemental strand, 29025240 - 29025037
Alignment:
| Q |
101 |
taatgattggatgctatactaaaaggtggtggttgatttcattatatgtgtaggaatcattcggaaaacaaaaactataagagaatgtcttcatcgtttc |
200 |
Q |
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||||||| |||| |||||| |||| ||| |||||||||||||| ||||| ||| ||| | ||||||||||||||||||||| |||| | ||||||||| |
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| T |
29025240 |
taatgatcggatactatacgaaaatgtgatggttgatttcattgtatgt--aggtatcttacggaaaacaaaaactataagaaaatgcttgcatcgtttc |
29025143 |
T |
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| Q |
201 |
tgcgaagagtgcatagacaagtgcatgcgctttgggtttttccttgaacttccaccatatttacttatcaatattttacatatttttagtttgaactgtg |
300 |
Q |
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|||| |||||||||||| ||||||||||||| ||||||| ||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
29025142 |
tgcggagagtgcatagagaagtgcatgcgctctgggtttgtccataaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgta |
29025043 |
T |
|
| Q |
301 |
ttgatt |
306 |
Q |
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|||||| |
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|
| T |
29025042 |
ttgatt |
29025037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 29025021 - 29024980
Alignment:
| Q |
339 |
tgcagaaaaaatgaatgtcctgtttgtcgcacacattgtcct |
380 |
Q |
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| T |
29025021 |
tgcagtaaaaatgaatgtcctatttgtcgcacacattgtcct |
29024980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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