View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_23 (Length: 389)
Name: NF5258_low_23
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 11384267 - 11384110
Alignment:
| Q |
24 |
aggaagagaacgaggaagaggaaacacaagcctgctagtgatttcttctccatggttatggtttagtgatgaattataaatttaaggactcccttcactt |
123 |
Q |
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| T |
11384267 |
aggaagagaacgaggaagaggaaacacaagcctggtagtgatttcttctccatggtt------tagtgatgaattataaatttaaggactcccttcactt |
11384174 |
T |
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| Q |
124 |
tgttaaatg--------tgtgatgaccttaagacacatatatatagccccaaggggcttagcca |
179 |
Q |
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| T |
11384173 |
tgttaaatgtgtgtatgtgtgatgaccttaagacacatatatatagccccaaggggcttagcca |
11384110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 332
Target Start/End: Complemental strand, 11383845 - 11383698
Alignment:
| Q |
185 |
aagagctataatggttattttaatgttggtcaaaattggttatgatatgtactaaagtagtcaagtagnnnnnnncttggtaatcaactagttaaatatc |
284 |
Q |
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| T |
11383845 |
aagagctataatggttattttaatgttggtcaaaattggttatgatatgtggcaaagtagtcaagtagtgtttttcttggtaatcaactagttaaatatc |
11383746 |
T |
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| Q |
285 |
tcattgatccctgtattttttatcatattttagcattgattcttgcac |
332 |
Q |
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| T |
11383745 |
tcattggtccctgtatttcttatcatattttagcattgattcttgcac |
11383698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 11381637 - 11381492
Alignment:
| Q |
27 |
aagagaacgaggaagaggaaacacaagcctgctagtgatttcttctccatggttatggtttagtgatgaattataaa-tttaaggactcccttcactttg |
125 |
Q |
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| T |
11381637 |
aagagaacgaggaagaggaaaca--agcctgctagtgatttcttctccat------ggtttactgatgagttataaatttttatgactcccttcactttg |
11381546 |
T |
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| Q |
126 |
ttaaatgtgtg-----atgaccttaagacacatatatatagccccaaggggctt |
174 |
Q |
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| T |
11381545 |
ttaaatgtgtgtatctgtgaccttaaaacacacatatatagccccaaggggctt |
11381492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 33435335 - 33435286
Alignment:
| Q |
27 |
aagagaacgaggaagaggaaacacaagcctgctagtgatttcttctccat |
76 |
Q |
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| T |
33435335 |
aagagaacgaggaagaggaagcataagcctgctagtgttttcttctccat |
33435286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 11122249 - 11122300
Alignment:
| Q |
27 |
aagagaacgaggaagaggaaacacaagcctgctagtgatttcttctccatgg |
78 |
Q |
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| T |
11122249 |
aagagaacgaggaagaggatacacacgccaactagtgatttcttctccatgg |
11122300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 33430556 - 33430507
Alignment:
| Q |
27 |
aagagaacgaggaagaggaaacacaagcctgctagtgatttcttctccat |
76 |
Q |
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| T |
33430556 |
aagagaacgaggaagagtaagcacaagccagctattgatttcttctccat |
33430507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 11127602 - 11127653
Alignment:
| Q |
27 |
aagagaacgaggaagaggaaacacaagcctgctagtgatttcttctccatgg |
78 |
Q |
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| T |
11127602 |
aagagaacgaggaagaggaagcacaagacaactagtgatttcttttccatgg |
11127653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 28021644 - 28021780
Alignment:
| Q |
27 |
aagagaacgaggaagaggaaacacaagcctgctagtgatttcttctccatggttatggtttagtgatgaattataaattta-aggactcccttcactttg |
125 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||| | |
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| T |
28021644 |
aagaaaacgaggaagaggaaacacaattctgctagtgatttcttctccatggtt------tagtgatgaactataaatttatatgactcccttcacttgg |
28021737 |
T |
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| Q |
126 |
ttaaatgtg----tgatgaccttaagacacatatatatagccc |
164 |
Q |
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| T |
28021738 |
ttaaatgtgtgtgtgatgaccttaagacacatatatatagccc |
28021780 |
T |
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