View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_24 (Length: 388)
Name: NF5258_low_24
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_24 |
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| [»] chr4 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 178 - 388
Target Start/End: Original strand, 34825890 - 34826100
Alignment:
| Q |
178 |
aacaatcactaattattctagatttactgcagttgcaccaagactaattgactattcaattccaggggcattttgagctttttgattttcatgcatcatg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825890 |
aacaatcactaattattctagatttactgcagttgcaccaagactaattgactattcaattccaggggcattttgagctttttgattttcatgcatcata |
34825989 |
T |
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| Q |
278 |
acatattcacggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaa |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825990 |
acatattcacggagtctctcagctttttgtctcattgaatcaataatatcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaa |
34826089 |
T |
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| Q |
378 |
accactcacct |
388 |
Q |
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||||||||||| |
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| T |
34826090 |
accactcacct |
34826100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 253 - 388
Target Start/End: Original strand, 34822896 - 34823031
Alignment:
| Q |
253 |
agctttttgattttcatgcatcatgacatattcacggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgtttt |
352 |
Q |
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|||||| ||||| | || ||| ||||| || || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
34822896 |
agctttctgattctgatacattatgacgtactcgcggagtctctcggctttttgtttcatggaatcaataatctcttccgtttcatcatgtatctgtttt |
34822995 |
T |
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| Q |
353 |
ggcaaataaacctccaagaaatcaaaccactcacct |
388 |
Q |
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| T |
34822996 |
ggcaaataaacttccaagaaatcaaaccactcacct |
34823031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 34825814 - 34825869
Alignment:
| Q |
126 |
aagtatgccttaccagacagaccattaacaagttaacaaaatctaactaacaaaca |
181 |
Q |
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| T |
34825814 |
aagtaggccttaccagacagacccttaacgagttaacaaaatctaactaccaaaca |
34825869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 253 - 388
Target Start/End: Original strand, 28945533 - 28945668
Alignment:
| Q |
253 |
agctttttgattttcatgcatcatgacatattcacggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgtttt |
352 |
Q |
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|||||| ||||| | || ||| ||||| || || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
28945533 |
agctttctgattctgatacattatgacgtactcgcggagtctctcggctttttgtgtcatggaatcaataatctcttccgtttcatcatgtatctgtttt |
28945632 |
T |
|
| Q |
353 |
ggcaaataaacctccaagaaatcaaaccactcacct |
388 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
28945633 |
ggcaaataaacttccaagaaatcaaaccactcacct |
28945668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 287 - 388
Target Start/End: Complemental strand, 42233096 - 42232995
Alignment:
| Q |
287 |
cggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaaaccactcac |
386 |
Q |
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||||||| ||| |||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| |
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| T |
42233096 |
cggagtccctcggctttttgtctcatggaatcaatgatctctttcgtttcatcatgtatctgtttcggcaaacaaacttccaagaaatcaaaccactcac |
42232997 |
T |
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| Q |
387 |
ct |
388 |
Q |
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|| |
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| T |
42232996 |
ct |
42232995 |
T |
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