View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_26 (Length: 382)
Name: NF5258_low_26
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 10299641 - 10299293
Alignment:
| Q |
20 |
gttagagcataccttggtggctttaagtacaagatttgtggagttgttcaatatgctaatctttttggtgttgctattggatatactatagcagcttcca |
119 |
Q |
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| T |
10299641 |
gttagagcataccttggtggctttaagtacaagatttgtggagttgttcaatatgctaatctttttggtgttgctattggatatactatagcagcttcca |
10299542 |
T |
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| Q |
120 |
taagcatgatgtgagtttgtgacaaagttgaatgaaattttaaagatttgttattattaaattgtgttaattggtgnnnnnnngtgactttaatcaatag |
219 |
Q |
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| T |
10299541 |
taagcatgatgtgagtttgtgacaaagttgaatgaaattttaaagatttgttattattaaattgtgttaattggtgtttttttgtgactttaatcaatag |
10299442 |
T |
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| Q |
220 |
ggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatc |
319 |
Q |
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| T |
10299441 |
ggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggagatc |
10299342 |
T |
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| Q |
320 |
tttttctctcaaattcctgactttgatcagttatggtggctctctgctc |
368 |
Q |
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| T |
10299341 |
tttttctctcaaattcctgactttgatcagttatggtggctctctgctc |
10299293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 218 - 363
Target Start/End: Original strand, 40204131 - 40204276
Alignment:
| Q |
218 |
agggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggaga |
317 |
Q |
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| T |
40204131 |
agggcaattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaa |
40204230 |
T |
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| Q |
318 |
tctttttctctcaaattcctgactttgatcagttatggtggctctc |
363 |
Q |
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| | |||||||||||||| || |||||||| ||||||||||||| |
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| T |
40204231 |
ttatattctctcaaattccagattttgatcaaatatggtggctctc |
40204276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 363
Target Start/End: Original strand, 40208264 - 40208409
Alignment:
| Q |
218 |
agggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggaga |
317 |
Q |
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||||||||| ||||||| ||||||||||| || |||||||||||| ||||||| |||||||| | |||||||||||||||||||||||| ||| | | |
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| T |
40208264 |
agggcaattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaa |
40208363 |
T |
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| Q |
318 |
tctttttctctcaaattcctgactttgatcagttatggtggctctc |
363 |
Q |
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| | |||||||||||||| || |||||||| || ||||||||||| |
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| T |
40208364 |
ttatattctctcaaattccagattttgatcaattgtggtggctctc |
40208409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 363
Target Start/End: Original strand, 40200630 - 40200775
Alignment:
| Q |
218 |
agggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggaga |
317 |
Q |
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||||||||| ||||||| ||||||||||| || ||||| |||||| ||||||| |||||||| | |||||||||||||||||||||||| || | | |
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| T |
40200630 |
agggcaattgaaaggtcaaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaa |
40200729 |
T |
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| Q |
318 |
tctttttctctcaaattcctgactttgatcagttatggtggctctc |
363 |
Q |
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| | |||||||||||||| || |||||||| |||||||||||||| |
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| T |
40200730 |
ttatattctctcaaattccagattttgatcaattatggtggctctc |
40200775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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