View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5258_low_27 (Length: 375)
Name: NF5258_low_27
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 41077728 - 41078046
Alignment:
| Q |
20 |
aagtggtgatagtttgaaccggaaggattgccacaattacttggtgtggtggatgtgtctatgatggtagccatgggttcaagaagtgagtcataatgga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41077728 |
aagtggtgatagtttgaaccggaaggattgccacaattacttggtgtggtggatgtgtctatgatggtagccatgggttcaagaagtgagtcataatgga |
41077827 |
T |
|
| Q |
120 |
gattataattccattttgctgcagcatcagtttagctgctctggtgacaatatctttttagtgcttagtaattagtattccttagttgtatttctggttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41077828 |
gattataattccattttgctgcagcatcagtttagctgctctggtgacaatatctttttagtgcttagtaattagtattccttagttgtatttctggttt |
41077927 |
T |
|
| Q |
220 |
tacttcataggttttgtatgcagaatcatgagatgtgtgcctatattgtattatgctatgctttaattgattctatgttttcatggatgtatactgaccc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41077928 |
tacttcataggttttgtatgcagaatcatgagatgtgtgcctatattgtattatgctatgctttaattgattctatgttttcatggatgtatactgaccc |
41078027 |
T |
|
| Q |
320 |
cttttatgcatgtcttcta |
338 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41078028 |
cttttatgcatgtcttcta |
41078046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 1217178 - 1217228
Alignment:
| Q |
246 |
catgagatgtgtgcctatattgtattatgctatgctttaattgattctatg |
296 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
1217178 |
catgagatgtgtgcttgaattttattatgctatgctttaattgattctatg |
1217228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 4132091 - 4132034
Alignment:
| Q |
246 |
catgagatgtgtgcctatattgtattatgctatgctttaattgattctatgttttcat |
303 |
Q |
| |
|
|||||||| ||||| | |||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
4132091 |
catgagatatgtgcttgaattgtattgtgctatgctttaatcgattctatgttatcat |
4132034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University