View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5258_low_28 (Length: 374)

Name: NF5258_low_28
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5258_low_28
NF5258_low_28
[»] chr8 (23 HSPs)
chr8 (18-358)||(36005979-36006317)
chr8 (198-348)||(37517577-37517727)
chr8 (198-355)||(24125509-24125665)
chr8 (260-336)||(39435167-39435243)
chr8 (129-172)||(5526224-5526267)
chr8 (47-172)||(14600362-14600489)
chr8 (255-330)||(25021328-25021403)
chr8 (48-95)||(34365890-34365937)
chr8 (256-328)||(500735-500807)
chr8 (129-172)||(1809902-1809945)
chr8 (129-172)||(2234134-2234177)
chr8 (129-172)||(2968937-2968980)
chr8 (129-172)||(7291569-7291612)
chr8 (47-157)||(15665864-15665970)
chr8 (129-172)||(24790834-24790877)
chr8 (129-172)||(31202870-31202913)
chr8 (124-158)||(37720235-37720269)
chr8 (129-169)||(9501990-9502030)
chr8 (132-168)||(17693412-17693448)
chr8 (48-157)||(18190536-18190641)
chr8 (136-172)||(30026546-30026582)
chr8 (47-95)||(41362070-41362118)
chr8 (132-172)||(41362158-41362198)
[»] chr5 (16 HSPs)
chr5 (198-348)||(15291492-15291642)
chr5 (198-336)||(27337193-27337331)
chr5 (255-337)||(433791-433873)
chr5 (271-330)||(25662859-25662918)
chr5 (129-172)||(6635670-6635713)
chr5 (129-172)||(7771477-7771520)
chr5 (129-172)||(17331750-17331793)
chr5 (129-172)||(23881772-23881815)
chr5 (129-172)||(32309918-32309961)
chr5 (129-172)||(34431486-34431529)
chr5 (129-172)||(39531064-39531107)
chr5 (255-348)||(3113692-3113785)
chr5 (47-157)||(6074421-6074527)
chr5 (129-169)||(586162-586202)
chr5 (48-84)||(40564911-40564947)
chr5 (132-172)||(42505069-42505109)
[»] chr2 (35 HSPs)
chr2 (198-348)||(9684884-9685034)
chr2 (198-348)||(18744487-18744637)
chr2 (255-348)||(20142266-20142359)
chr2 (255-348)||(41867434-41867527)
chr2 (204-348)||(17345126-17345270)
chr2 (255-348)||(44686905-44686998)
chr2 (260-348)||(4412597-4412685)
chr2 (255-329)||(28225507-28225580)
chr2 (47-157)||(5071055-5071161)
chr2 (198-346)||(19161295-19161443)
chr2 (132-172)||(10286670-10286710)
chr2 (129-172)||(3527408-3527451)
chr2 (129-172)||(13878665-13878708)
chr2 (129-172)||(14018790-14018833)
chr2 (129-172)||(16136500-16136543)
chr2 (129-172)||(20560789-20560832)
chr2 (129-172)||(25068263-25068306)
chr2 (129-172)||(29543215-29543258)
chr2 (129-172)||(33012470-33012513)
chr2 (129-172)||(35333927-35333970)
chr2 (129-172)||(44942708-44942751)
chr2 (50-96)||(4615265-4615311)
chr2 (49-169)||(4739669-4739791)
chr2 (47-97)||(11931195-11931245)
chr2 (47-84)||(4604062-4604099)
chr2 (43-84)||(30933567-30933608)
chr2 (129-170)||(32015675-32015716)
chr2 (47-95)||(13548655-13548703)
chr2 (47-95)||(17056212-17056260)
chr2 (47-95)||(17068659-17068707)
chr2 (47-95)||(17095229-17095277)
chr2 (132-168)||(25508870-25508906)
chr2 (132-172)||(31908473-31908513)
chr2 (40-84)||(38535050-38535094)
chr2 (132-172)||(43696293-43696333)
[»] chr1 (15 HSPs)
chr1 (203-348)||(28040601-28040746)
chr1 (198-348)||(19035915-19036065)
chr1 (256-351)||(15585345-15585440)
chr1 (198-348)||(37200743-37200893)
chr1 (43-172)||(28677795-28677926)
chr1 (129-172)||(28666480-28666523)
chr1 (129-172)||(37822019-37822062)
chr1 (47-172)||(44517486-44517613)
chr1 (47-157)||(13691448-13691554)
chr1 (129-172)||(4882033-4882076)
chr1 (129-172)||(15390908-15390951)
chr1 (129-172)||(25032759-25032802)
chr1 (129-172)||(29205690-29205733)
chr1 (121-172)||(8893684-8893736)
chr1 (121-172)||(34659311-34659363)
[»] chr7 (18 HSPs)
chr7 (255-336)||(5827754-5827835)
chr7 (47-172)||(42603435-42603562)
chr7 (47-157)||(21328983-21329089)
chr7 (255-346)||(24528080-24528171)
chr7 (48-172)||(27535767-27535892)
chr7 (50-172)||(4621036-4621160)
chr7 (129-172)||(11833440-11833483)
chr7 (129-172)||(21991084-21991127)
chr7 (129-172)||(44482534-44482577)
chr7 (129-172)||(48643482-48643525)
chr7 (47-84)||(22751725-22751762)
chr7 (132-172)||(2623017-2623057)
chr7 (132-172)||(9137817-9137857)
chr7 (129-169)||(22747168-22747208)
chr7 (132-172)||(24533555-24533595)
chr7 (132-168)||(25286989-25287025)
chr7 (48-84)||(37593422-37593458)
chr7 (129-169)||(45482474-45482514)
[»] chr6 (22 HSPs)
chr6 (199-336)||(7200043-7200180)
chr6 (198-336)||(34304997-34305135)
chr6 (198-355)||(8374767-8374924)
chr6 (47-172)||(8693327-8693454)
chr6 (199-321)||(29337556-29337678)
chr6 (48-172)||(2488461-2488587)
chr6 (48-172)||(4660767-4660893)
chr6 (48-172)||(8644552-8644672)
chr6 (47-172)||(19402508-19402635)
chr6 (198-287)||(32120477-32120566)
chr6 (47-95)||(5416967-5417015)
chr6 (129-172)||(5146348-5146391)
chr6 (129-172)||(12653974-12654017)
chr6 (129-172)||(15589781-15589824)
chr6 (129-172)||(23654671-23654714)
chr6 (129-172)||(30813479-30813522)
chr6 (129-172)||(31804615-31804658)
chr6 (48-85)||(6419603-6419640)
chr6 (255-364)||(23910816-23910925)
chr6 (292-348)||(45232-45288)
chr6 (132-168)||(11321345-11321381)
chr6 (129-157)||(19760189-19760217)
[»] chr4 (24 HSPs)
chr4 (198-346)||(53170988-53171136)
chr4 (48-172)||(27091047-27091173)
chr4 (198-247)||(23809168-23809217)
chr4 (256-348)||(16958023-16958115)
chr4 (43-173)||(31522280-31522412)
chr4 (129-172)||(7083477-7083520)
chr4 (129-172)||(8712930-8712973)
chr4 (221-355)||(24222372-24222506)
chr4 (48-172)||(46268005-46268130)
chr4 (255-337)||(56461640-56461722)
chr4 (270-346)||(32335341-32335417)
chr4 (129-172)||(7084364-7084407)
chr4 (129-172)||(13965965-13966008)
chr4 (129-172)||(14346832-14346875)
chr4 (129-172)||(24826061-24826104)
chr4 (129-172)||(38434999-38435042)
chr4 (129-172)||(42197975-42198018)
chr4 (129-172)||(45350726-45350769)
chr4 (129-172)||(45360205-45360248)
chr4 (47-97)||(7860942-7860992)
chr4 (255-336)||(25707002-25707084)
chr4 (48-86)||(46775610-46775648)
chr4 (129-169)||(6882366-6882406)
chr4 (132-172)||(41837739-41837779)
[»] chr3 (27 HSPs)
chr3 (255-337)||(53786207-53786289)
chr3 (47-172)||(2192416-2192543)
chr3 (47-172)||(13701666-13701793)
chr3 (48-172)||(105712-105837)
chr3 (48-172)||(4019922-4020042)
chr3 (255-348)||(35236616-35236709)
chr3 (43-95)||(4082042-4082094)
chr3 (129-172)||(1074558-1074601)
chr3 (129-172)||(11819506-11819549)
chr3 (129-172)||(21803932-21803975)
chr3 (129-172)||(24483360-24483403)
chr3 (129-172)||(40012936-40012979)
chr3 (129-172)||(48401514-48401557)
chr3 (198-337)||(49018451-49018590)
chr3 (129-172)||(49627768-49627811)
chr3 (129-172)||(55090363-55090406)
chr3 (53-95)||(6903105-6903147)
chr3 (130-172)||(48855300-48855342)
chr3 (49-95)||(53962443-53962489)
chr3 (204-241)||(44431438-44431475)
chr3 (43-84)||(51990629-51990670)
chr3 (131-172)||(54706396-54706437)
chr3 (132-172)||(14585887-14585927)
chr3 (132-172)||(19645615-19645655)
chr3 (47-95)||(28995052-28995100)
chr3 (132-172)||(50981130-50981170)
chr3 (132-172)||(51084264-51084304)
[»] scaffold0288 (1 HSPs)
scaffold0288 (48-172)||(20932-21058)
[»] scaffold0186 (1 HSPs)
scaffold0186 (198-325)||(20232-20363)
[»] scaffold0294 (1 HSPs)
scaffold0294 (47-169)||(3726-3850)
[»] scaffold1294 (1 HSPs)
scaffold1294 (48-95)||(1099-1146)
[»] scaffold0999 (1 HSPs)
scaffold0999 (133-172)||(2117-2156)
[»] scaffold0536 (1 HSPs)
scaffold0536 (129-172)||(3317-3360)
[»] scaffold0155 (1 HSPs)
scaffold0155 (129-172)||(35497-35540)
[»] scaffold0006 (1 HSPs)
scaffold0006 (49-97)||(35996-36044)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 36006317 - 36005979
Alignment:
Q  18 atatttaacgttaaaggcttacacattttccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattc 117  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36006317 atatttaacgttaaaaacttacacattttccattttatgctattaacacagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattt 36006218  T
Q  118 gtattgcattgatcgatgtactctatcaatttgagtgaataaacatcgtttatttcaagttnnnnnnntcacattagtcattcaagatatggaagtgaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||        |||||||||||||||||||||||||||||||     
T  36006217 gtattgcattgatcgatgtactctatcaatttgagtgaataaacattgtttatttctagtcaaaaaaatcacattagtcattcaagatatggaagtgaag 36006118  T
Q  218 tttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatc 317  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||  || ||||| |||||||||||||||||||||||||||    
T  36006117 tttgacatgaccacaagatagaaagcaattctggagggtttgcaagcaacacatgctcaaga--ttattcaagctatcccaatttatgggttaggtcatc 36006020  T
Q  318 atatgtcaccagtagagtattatactatcctcaaatatggc 358  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36006019 atatgtcaccagtagagtattatactatcctcaaatatggc 36005979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 348
Target Start/End: Complemental strand, 37517727 - 37517577
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaa-atcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcc 296  Q
    |||| |||||| |||| || |||||||||||||| |||||||| || | || |||| | ||||||||||||| ||||||| |||||||||| || |||||    
T  37517727 ttcatgatatgaaagttaagtttgacatgaccacgagatagaagataatttttggatg-tttgcaagcagcacatgctcatgattttcttctaagtatcc 37517629  T
Q  297 caatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    | ||| ||||||||||||| |||||||||||||| |||||| ||| ||||||    
T  37517628 cgattgatgggttaggtcaacatatgtcaccagtggagtatcataatatcct 37517577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 355
Target Start/End: Complemental strand, 24125665 - 24125509
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||||||||||||||| || ||||||||||| || |||||| |  ||||  | ||  ||||||||||| || ||||||| |||||||||| | |||||||    
T  24125665 ttcaagatatggaagttaagtttgacatgacaacgagataggaggcaatattagaatgtttgcaagcatcacatgctcaggattttcttctagctatccc 24125566  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaaatat 355  Q
     ||| |||||||||||||  |||||||| |||| |||||   ||||||||| ||||||    
T  24125565 gattgatgggttaggtcaggatatgtca-cagtggagtaccgtactatccttaaatat 24125509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 39435243 - 39435167
Alignment:
Q  260 caagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagta 336  Q
    |||||| || |||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||| ||| |||||    
T  39435243 caagcaccacatgctcaagattttcttctagctatcccaattgatgggttaggtcagcatatgtcactagttgagta 39435167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 5526224 - 5526267
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  5526224 atcgatgtactctatcaatttgaatgaataaatatcgtttattt 5526267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 14600489 - 14600362
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 144  Q
    |||||||||||||||||||| ||| |||||| ||||||  ||||||||| | | ||||| ||   |||||   ||| | |||| |||||||||||||||     
T  14600489 ccgttttatgctattaacatggatgttgtgagtttgttcatagattcatcctttttgtttttagcgaatttaaatttgtattgtatcgatgtactctatt 14600390  T
Q  145 aatttgagtgaataaacatcgtttattt 172  Q
    ||||||| |||||||| |||||||||||    
T  14600389 aatttgaatgaataaatatcgtttattt 14600362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 25021328 - 25021403
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagt 330  Q
    |||||||||||||| |||||||||||||||||| |  |||||  ||| |||||||| |||| || |||||||||||    
T  25021328 gtttgcaagcagcacatgctcaagattttcttctagttatccatattgatgggttaagtcagcacatgtcaccagt 25021403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 34365890 - 34365937
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  34365890 cgttttatgctattaacataaatattgtgagtttgtttgcagattcat 34365937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 500807 - 500735
Alignment:
Q  256 tttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcacca 328  Q
    ||||||||||||| ||||||| |||||||||| | | ||||  ||| ||| ||||||||| ||||||||||||    
T  500807 tttgcaagcagcatatgctcatgattttcttctagcaatcctgattgatgagttaggtcagcatatgtcacca 500735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 1809945 - 1809902
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  1809945 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 1809902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 2234177 - 2234134
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  2234177 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 2234134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 2968937 - 2968980
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  2968937 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 2968980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 7291569 - 7291612
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||    
T  7291569 atcgatgtactctatcaattttaatgaatgaacatcgtttattt 7291612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 15665864 - 15665970
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattg-atcgatgtactctatca 145  Q
    |||||||||||||||||||| ||| |||||| |||||||| |||||| | | | ||||| ||   ||||     |||||||| |||||||||||||||||    
T  15665864 ccgttttatgctattaacatggatgttgtgagtttgtttgcagattcgtcctttttgtttttggcgaat-----ttgcattgtatcgatgtactctatca 15665958  T
Q  146 atttgagtgaat 157  Q
    |||||| |||||    
T  15665959 atttgaatgaat 15665970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 24790877 - 24790834
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  24790877 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 24790834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 31202870 - 31202913
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  31202870 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 31202913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 37720235 - 37720269
Alignment:
Q  124 cattgatcgatgtactctatcaatttgagtgaata 158  Q
    |||||||||||||||||||||||||||| ||||||    
T  37720235 cattgatcgatgtactctatcaatttgaatgaata 37720269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 9501990 - 9502030
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgttta 169  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  9501990 atcgatgtactctatcaatttgaatgaatgaatatcgttta 9502030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 17693448 - 17693412
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgttt 168  Q
    |||||||||||||||||||||||||| || |||||||    
T  17693448 gatgtactctatcaatttgagtgaatgaatatcgttt 17693412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 18190641 - 18190536
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaat 147  Q
    |||||||||||||||| || ||| |||||| ||||||   |||||||||| | ||||| ||   ||||| |||||||    ||||||||||||||| |||    
T  18190641 cgttttatgctattaatatggatgttgtgagtttgttcacagattcattctttttgtttttagcgaatttgtattgc----atcgatgtactctattaat 18190546  T
Q  148 ttgagtgaat 157  Q
    |||| |||||    
T  18190545 ttgaatgaat 18190536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 30026582 - 30026546
Alignment:
Q  136 tactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||| |||||||| |||||||||||    
T  30026582 tactctatcaatttgaatgaataaatatcgtttattt 30026546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 41362070 - 41362118
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    |||||||||||||||||||| ||| |||||| ||||||  |||||||||    
T  41362070 ccgttttatgctattaacatggatgttgtgagtttgttcatagattcat 41362118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 41362158 - 41362198
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  41362158 gatgtactctatcaatttgaatgaatgaatatcgtttattt 41362198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 348
Target Start/End: Original strand, 15291492 - 15291642
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||||||||||||||| || |||||||||||||| ||| ||||  ||||| |||   |||||||||||||| ||||||  |||||||||| | |||||||    
T  15291492 ttcaagatatggaagttaagtttgacatgaccacgagacagaaggcaattttgggatgtttgcaagcagcacatgctcgggattttcttctagctatccc 15291591  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    |||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  15291592 aattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatcct 15291642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 336
Target Start/End: Complemental strand, 27337331 - 27337193
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||||||||||||||| || |||||||||||||| ||| ||||  || || |||   |||||||| || || |||||||||||||||||  | |||||||    
T  27337331 ttcaagatatggaagttaagtttgacatgaccactagacagaaggcagttttgggatgtttgcaaccaccacatgctcaagattttcttttagctatccc 27337232  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagta 336  Q
    |||| ||||||||||| | |||||||||||||| |||||    
T  27337231 aattgatgggttaggttagcatatgtcaccagttgagta 27337193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 433873 - 433791
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtat 337  Q
    ||||||||||| || |||||||||||||||||| | ||||||||||| |||||||||| || |||||||||||| | ||||||    
T  433873 gtttgcaagcaccacatgctcaagattttcttctagctatcccaattgatgggttaggccagcatatgtcaccaattgagtat 433791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 25662859 - 25662918
Alignment:
Q  271 tgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagt 330  Q
    ||||||||||||||||| | ||||||||||| ||||||| ||||| ||||||||||||||    
T  25662859 tgctcaagattttcttctagctatcccaattgatgggttgggtcagcatatgtcaccagt 25662918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 6635670 - 6635713
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  6635670 atcgatgtactctatcaatttgaatgaatgaaaatcgtttattt 6635713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 7771520 - 7771477
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||    
T  7771520 atcgatgtactatatcaatttgaatgaataaatatcgtttattt 7771477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 17331750 - 17331793
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  17331750 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 17331793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 23881815 - 23881772
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  23881815 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 23881772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 32309918 - 32309961
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  32309918 atcgatgtactctatcaatttgaatgaatcaatatcgtttattt 32309961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 34431486 - 34431529
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  34431486 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 34431529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 39531107 - 39531064
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  39531107 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 39531064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 3113692 - 3113785
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    ||||| |||||||| |||||||||||||||| | | ||||||| ||| |||  |||||||| |||| ||||  ||| ||||||  |||||||||    
T  3113692 gtttggaagcagcacatgctcaagattttctcctagctatcccgattgatgatttaggtcagcataggtcattagtggagtatcgtactatcct 3113785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 6074527 - 6074421
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaa 146  Q
    ||||||| |||||||||||| ||| |||||| ||||||  ||||||||| | | ||||| ||   ||||| |||||||    ||||||||||||||||||    
T  6074527 ccgttttgtgctattaacatggatgttgtgagtttgttcatagattcatcctttttgtttttagcgaatttgtattgc----atcgatgtactctatcaa 6074432  T
Q  147 tttgagtgaat 157  Q
    | ||| |||||    
T  6074431 tgtgaatgaat 6074421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 586162 - 586202
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgttta 169  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  586162 atcgatgtactctatcaatttgaatgaatgaatatcgttta 586202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 40564947 - 40564911
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtt 84  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  40564947 cgttttatgctattaacatagatgttgtgagtttgtt 40564911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 42505109 - 42505069
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  42505109 gatgtactctatcaatttgaatgaatgaatatcgtttattt 42505069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 348
Target Start/End: Original strand, 9684884 - 9685034
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||  ||||| | |   |||||||||||||| || ||||||||||||||| | |||||||    
T  9684884 ttcaggatatggaagttaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagcacatactcaagattttcttctagctatccc 9684983  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
     ||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  9684984 tattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatcct 9685034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 348
Target Start/End: Original strand, 18744487 - 18744637
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||| ||||||||||| || ||||| |||||||| ||| ||||  ||||| | |   ||||||||||| || |||||||||| ||||||| | |||||||    
T  18744487 ttcaggatatggaagttaagtttgagatgaccacgagacagaaggcaatttttggatgtttgcaagcaccaaatgctcaagaatttcttctagctatccc 18744586  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
     ||| ||||||||||| | |||||||||||||| ||||||  |||||||||    
T  18744587 gattgatgggttaggttagcatatgtcaccagtggagtatcgtactatcct 18744637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 20142266 - 20142359
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    |||||||||||||| ||||||| |||||||||| | ||||||| ||| |||||||| |||| ||||||||| |||| ||||||| |||||||||    
T  20142266 gtttgcaagcagcacatgctcaggattttcttctagctatcccgattgatgggttaagtcagcatatgtcaacagtggagtattgtactatcct 20142359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 41867434 - 41867527
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    |||||||||||||| |||||||  ||||||||| | ||||||| ||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  41867434 gtttgcaagcagcacatgctcagaattttcttctagctatcccgattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatcct 41867527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 348
Target Start/End: Complemental strand, 17345270 - 17345126
Alignment:
Q  204 atatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcccaattta 303  Q
    |||||||||| || |||||||||||||| ||| | ||  ||||| | |   ||||||||| | || |||||||||||||||||| | ||||||||||| |    
T  17345270 atatggaagttaagtttgacatgaccaccagacaaaagacaatttttggatgtttgcaagaaccacatgctcaagattttcttctagctatcccaattga 17345171  T
Q  304 tgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    |||||||||||  |||||||||| ||| ||||||  |||||||||    
T  17345170 tgggttaggtcggcatatgtcactagtggagtatcgtactatcct 17345126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 44686998 - 44686905
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    |||||||||||||| ||||| |||||||||||| | ||||| ||||| |||||||||||||  ||||||||||| | ||||||  |||||||||    
T  44686998 gtttgcaagcagcacatgcttaagattttcttctagctatctcaattgatgggttaggtcagtatatgtcaccaatggagtatcgtactatcct 44686905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 4412597 - 4412685
Alignment:
Q  260 caagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    |||||| || ||||||| |||||||||| | ||||||| ||| ||| ||||||||| |||||||||||||| ||||||  |||||||||    
T  4412597 caagcaacacatgctcaggattttcttctagctatcccgattgatgagttaggtcagcatatgtcaccagtggagtatcgtactatcct 4412685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 28225580 - 28225507
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccag 329  Q
    ||||||||| |||| |||||||||||||||||| | |||| |||||| ||||||||| ||| |||||||||||||    
T  28225580 gtttgcaagaagcacatgctcaagattttcttctagctat-ccaattgatgggttagatcagcatatgtcaccag 28225507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 5071161 - 5071055
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaa 146  Q
    |||||||||||||||||||| ||| |||||| |||||| | |||||||| | | ||||| ||   ||||| |||||||    ||||||||||||||||||    
T  5071161 ccgttttatgctattaacatggatgttgtgagtttgttcgcagattcatcctttttgttattagcgaatttgtattgc----atcgatgtactctatcaa 5071066  T
Q  147 tttgagtgaat 157  Q
    ||||| |||||    
T  5071065 tttgaatgaat 5071055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 346
Target Start/End: Original strand, 19161295 - 19161443
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||||||||||||||| || |||||||||| ||| ||| ||||  ||| | | |   |||||||||||  | ||||||| |||||||||| | ||||||     
T  19161295 ttcaagatatggaagttaagtttgacatgatcacgagacagaagacaactttaggatgtttgcaagcaatatatgctcaggattttcttctagctatcct 19161394  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatc 346  Q
     ||| || |||||||||| ||||||||| |||| ||||||  |||||||    
T  19161395 gattgataggttaggtcagcatatgtcatcagtggagtatcgtactatc 19161443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 10286710 - 10286670
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  10286710 gatgtactctatcaatttgaatgaataaatatcgtttattt 10286670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 3527408 - 3527451
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  3527408 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 3527451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 13878708 - 13878665
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  13878708 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 13878665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 14018833 - 14018790
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  14018833 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 14018790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 16136500 - 16136543
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  16136500 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 16136543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 20560832 - 20560789
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  20560832 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 20560789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 25068263 - 25068306
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  25068263 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 25068306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 29543215 - 29543258
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  29543215 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 29543258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 33012470 - 33012513
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  33012470 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 33012513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 35333927 - 35333970
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  35333927 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 35333970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 44942708 - 44942751
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  44942708 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 44942751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 4615265 - 4615311
Alignment:
Q  50 ttttatgctattaacatagatattgtgaatttgtttgtagattcatt 96  Q
    ||||||| |||||| ||| |||||||||||||||| |||||||||||    
T  4615265 ttttatgttattaatataaatattgtgaatttgttcgtagattcatt 4615311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 4739669 - 4739791
Alignment:
Q  49 gttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatcaa 146  Q
    |||||||||||||||||| ||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | ||| | |||| ||||||||||||||||||    
T  4739669 gttttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgatgtactctatcaa 4739768  T
Q  147 tttgagtgaataaacatcgttta 169  Q
    ||||| ||||| || ||||||||    
T  4739769 tttgaatgaatgaatatcgttta 4739791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 11931195 - 11931245
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattc 97  Q
    |||||||||||||||||||| ||| |||||| |||||| | ||||||||||    
T  11931195 ccgttttatgctattaacatggatgttgtgagtttgttcgcagattcattc 11931245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 4604099 - 4604062
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtt 84  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  4604099 ccgttttatgctattaacatggatattgtgagtttgtt 4604062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 30933567 - 30933608
Alignment:
Q  43 ttttccgttttatgctattaacatagatattgtgaatttgtt 84  Q
    |||||||||||||||||||||||| ||| |||||| ||||||    
T  30933567 ttttccgttttatgctattaacatggatgttgtgagtttgtt 30933608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 32015675 - 32015716
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttat 170  Q
    ||||||||||||||||||||||| ||||| || |||||||||    
T  32015675 atcgatgtactctatcaatttgaatgaatgaatatcgtttat 32015716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 13548703 - 13548655
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    |||||||||||||||||||| |||| | ||| |||||| ||||||||||    
T  13548703 ccgttttatgctattaacatggatactctgagtttgttcgtagattcat 13548655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 17056260 - 17056212
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    ||||||||||||||||||||  || |||||| |||||| ||||||||||    
T  17056260 ccgttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17056212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 17068707 - 17068659
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    ||||||||||||||||||||  || |||||| |||||| ||||||||||    
T  17068707 ccgttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17068659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 17095277 - 17095229
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    ||||||||||||||||||||  || |||||| |||||| ||||||||||    
T  17095277 ccgttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17095229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 25508906 - 25508870
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgttt 168  Q
    |||||||||||||||||||| |||||||| |||||||    
T  25508906 gatgtactctatcaatttgaatgaataaatatcgttt 25508870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 31908513 - 31908473
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  31908513 gatgtactctatcaatttgaatgaatgaatatcgtttattt 31908473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 38535094 - 38535050
Alignment:
Q  40 acattttccgttttatgctattaacatagatattgtgaatttgtt 84  Q
    |||||| |||||||||||||||||||| ||| |||||| ||||||    
T  38535094 acatttgccgttttatgctattaacatggatgttgtgagtttgtt 38535050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 43696293 - 43696333
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  43696293 gatgtactctatcaatttgaatgaatgaatatcgtttattt 43696333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 348
Target Start/End: Original strand, 28040601 - 28040746
Alignment:
Q  203 gatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcccaattt 302  Q
    ||||||||| | || |||||||||||||| ||| ||||  ||||| | |   |||||||||||| | |||||||||||||||||| | ||||||| |||     
T  28040601 gatatggaaattaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagaacatgctcaagattttcttctagctatcccgattg 28040700  T
Q  303 atgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    || |||||||||| |||||||||||||| |||||| ||||||||||    
T  28040701 attggttaggtcaacatatgtcaccagtggagtatcatactatcct 28040746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 348
Target Start/End: Complemental strand, 19036065 - 19035915
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||| ||||||||||| || |||||||||||||| ||| | ||  ||||| | |   || ||||||||||| ||||||  |||||||||| | |||||||    
T  19036065 ttcaggatatggaagttaagtttgacatgaccacgagacaaaaggcaatttttggatgtctgcaagcagcacatgctcgggattttcttctagctatccc 19035966  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
     ||| ||| ||||||||| |||||||||||||| |||||| ||||||||||    
T  19035965 gattgatgagttaggtcaacatatgtcaccagtggagtatcatactatcct 19035915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 15585440 - 15585345
Alignment:
Q  256 tttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaa 351  Q
    |||||||||| || ||||||||||||| |||  | ||||||| ||| |||||||||| ||  ||||||||||||||||||||| ||||||| ||||    
T  15585440 tttgcaagcaacacatgctcaagatttacttttagctatccctattgatgggttaggccaaaatatgtcaccagtagagtattgtactatcatcaa 15585345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 348
Target Start/End: Complemental strand, 37200893 - 37200743
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||||||||||||||| ||||||||||||||||| |   | ||  ||||| |   | ||||||||| |||| |||||||  ||||||||  ||||||||     
T  37200893 ttcaagatatggaagttaaatttgacatgaccactacgcataagacaattttaaggtgtttgcaagtagcacatgctcatcattttcttttaactatcca 37200794  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
     ||  ||||||||||||| |||||||||| ||| |||||| ||||||||||    
T  37200793 tatggatgggttaggtcagcatatgtcactagtggagtatcatactatcct 37200743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 28677926 - 28677795
Alignment:
Q  43 ttttccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgta-ttgcattg-atcgatgtactc 140  Q
    |||||||||||||||||||||||| ||| |||||| |||||| | |||||||| | | ||||| ||   ||||| | | ||| |||| ||||||||||||    
T  28677926 ttttccgttttatgctattaacatggatgttgtgagtttgttcgcagattcatcctttttgtttttagcgaatttggatttgtattgtatcgatgtactc 28677827  T
Q  141 tatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||| | ||| || |||||||||||    
T  28677826 tatcaatttgaataaatgaatatcgtttattt 28677795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 28666480 - 28666523
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  28666480 atcgatgtactctatcaatttgaatgaataaatatcgtttattt 28666523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 37822062 - 37822019
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  37822062 atcgatgtactctatcaatttgagtgaatgaatatcgtttattt 37822019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 44517486 - 44517613
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 144  Q
    |||||||||||||||||||| ||| |||||| ||||||   ||| |||| | | ||||| ||  |||||| | ||| | |||| ||||||||||||||||    
T  44517486 ccgttttatgctattaacatggatgttgtgagtttgttcacagagtcatcctttttgtttttagtgaatttggatttgtattgtatcgatgtactctatc 44517585  T
Q  145 aatttgagtgaataaacatcgtttattt 172  Q
    ||||||| ||||| || |||||||||||    
T  44517586 aatttgaatgaatgaatatcgtttattt 44517613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 13691554 - 13691448
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaa 146  Q
    |||||||||||||||||||| ||| |||||| ||||||  ||||||||| | | ||||| ||    |||| |||||||    ||||||||||||||||||    
T  13691554 ccgttttatgctattaacatggatgttgtgagtttgttcatagattcatcctttttgtttttagcaaatttgtattgc----atcgatgtactctatcaa 13691459  T
Q  147 tttgagtgaat 157  Q
    ||||| |||||    
T  13691458 tttgaatgaat 13691448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 4882076 - 4882033
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  4882076 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 4882033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 15390951 - 15390908
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||| |||| |||||||| |||||||||||    
T  15390951 atcgatgtactctatcaagttgaatgaataaatatcgtttattt 15390908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 25032802 - 25032759
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  25032802 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 25032759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 29205690 - 29205733
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  29205690 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 29205733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 8893684 - 8893736
Alignment:
Q  121 ttgcattg-atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||| |||||||    
T  8893684 ttgcattgtatcgatgtactctatcaatttgaatgaatgaatatcatttattt 8893736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 34659363 - 34659311
Alignment:
Q  121 ttgcattg-atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||| |||||||    
T  34659363 ttgcattgtatcgatgtactctatcaatttgaatgaatgaatatcatttattt 34659311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 5827835 - 5827754
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagta 336  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||||| ||||||||||||| |||||||||||||| |||||    
T  5827835 gtttgcaagcagcacatgctcaaaattttcttctagctatcccaattgatgggttaggtcagcatatgtcaccagtggagta 5827754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 42603562 - 42603435
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgc-attg-atcgatgtactctatc 144  Q
    |||||||||||||||||||||||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | |||   |||| ||||||||||||||||    
T  42603562 ccgttttatgctattaacatagatgttgtgagtttgttcacagattcatccgttttgtttttagcgaatttgaatttatattgtatcgatgtactctatc 42603463  T
Q  145 aatttgagtgaataaacatcgtttattt 172  Q
    ||||||| ||||| ||||||||||||||    
T  42603462 aatttgaatgaatgaacatcgtttattt 42603435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 21329089 - 21328983
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaa 146  Q
    |||||||||||||||||||| ||| |||||||||||||   |||||||| | | ||||| ||   ||||| |||||||    ||||||||||||||||||    
T  21329089 ccgttttatgctattaacatggatgttgtgaatttgttcacagattcatcctttttgtttttagcgaatttgtattgc----atcgatgtactctatcaa 21328994  T
Q  147 tttgagtgaat 157  Q
    ||||| |||||    
T  21328993 tttgaatgaat 21328983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 24528171 - 24528080
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatc 346  Q
    |||||||||||  | ||||||| |||||||||| | |||||   ||| |||||||||| || |||||||||||||| |||||| ||||||||    
T  24528171 gtttgcaagcataatatgctcaggattttcttctagctatcatgattgatgggttaggacaacatatgtcaccagtggagtatcatactatc 24528080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 27535767 - 27535892
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatca 145  Q
    ||||||||||||||||||| ||| |||||| ||||||   | |||||| | | ||||| || | ||||| ||||| | |||| |||||||||||||||||    
T  27535767 cgttttatgctattaacatggatgttgtgagtttgttac-atattcatccttgttgtttttgacgaatttgtatttgtattgtatcgatgtactctatca 27535865  T
Q  146 atttgagtgaataaacatcgtttattt 172  Q
    |||| | |||||||| |||||||||||    
T  27535866 atttaaatgaataaatatcgtttattt 27535892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 4621160 - 4621036
Alignment:
Q  50 ttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatcaat 147  Q
    |||||||||||||||||  || |||||| ||||||   |||||||| | | ||||| || | ||||| | ||| | |||| |||||||||||||||||||    
T  4621160 ttttatgctattaacatgaatgttgtgagtttgttaacagattcatcctttttgtttttaacgaatttggatttgaattgtatcgatgtactctatcaat 4621061  T
Q  148 ttgagtgaataaacatcgtttattt 172  Q
    |||| ||||| || |||||||||||    
T  4621060 ttgaatgaatgaatatcgtttattt 4621036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 11833440 - 11833483
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  11833440 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 11833483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 21991084 - 21991127
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  21991084 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 21991127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 44482577 - 44482534
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  44482577 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 44482534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 48643525 - 48643482
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  48643525 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 48643482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 22751725 - 22751762
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtt 84  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  22751725 ccgttttatgttattaacatagatgttgtgaatttgtt 22751762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 2623017 - 2623057
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  2623017 gatgtactctatcaatttgaatgaatgaatatcgtttattt 2623057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 9137817 - 9137857
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| |||||||| ||| |||||||    
T  9137817 gatgtactctatcaatttgaatgaataaatatcttttattt 9137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 22747208 - 22747168
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgttta 169  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  22747208 atcgatgtactctatcaatttgaatgaatcaatatcgttta 22747168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 24533595 - 24533555
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| |||||||| ||| |||||||    
T  24533595 gatgtactctatcaatttgattgaataaatatcttttattt 24533555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 25287025 - 25286989
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgttt 168  Q
    |||||||||||||||||||| |||||||| |||||||    
T  25287025 gatgtactctatcaatttgaatgaataaatatcgttt 25286989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 37593422 - 37593458
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtt 84  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  37593422 cgttttatgctattaacatggatattgtgagtttgtt 37593458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 45482474 - 45482514
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgttta 169  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  45482474 atcgatgtactctatcaatttgaatgaattaatatcgttta 45482514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 336
Target Start/End: Original strand, 7200043 - 7200180
Alignment:
Q  199 tcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccca 298  Q
    |||||||||||||||||| ||||| |||||||||||| |||||  | |||| | | ||| ||||| || | ||||||| |||||||||| | ||||| ||    
T  7200043 tcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggtgttggcaagaagaacatgctcaggattttcttctagctatctca 7200142  T
Q  299 atttatgggttaggtcatcatatgtcaccagtagagta 336  Q
    ||| ||||||||| ||| ||||||||||  ||||||||    
T  7200143 attgatgggttagatcaacatatgtcacacgtagagta 7200180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 336
Target Start/End: Complemental strand, 34305135 - 34304997
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||||||||||||||| || |||||||||||| ||||| ||||   | || | |   ||||| |||||||| |||||||||||||| ||| |  ||||||    
T  34305135 ttcaagatatggaagttaagtttgacatgaccgcaagacagaaggaagtttttggatgtttggaagcagcacatgctcaagattttattctaggtatccc 34305036  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagta 336  Q
    |||| |||||||| |||| |||||||||||||| |||||    
T  34305035 aattgatgggttatgtcagcatatgtcaccagtggagta 34304997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 355
Target Start/End: Original strand, 8374767 - 8374924
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    |||| |||||||||||||||||||||||||||||  || |||||  | || |   | |||||||| || || |||||||| ||||||||| | ||||||     
T  8374767 ttcaggatatggaagtgaaatttgacatgaccacgcgacagaaagtagtttttcggtgtttgcaaacaacacatgctcaatattttcttctagctatcct 8374866  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaaatat 355  Q
     ||| |||||||| | || |||||||||||| ||||||||  ||||||||||| ||||    
T  8374867 tattgatgggttaagccaacatatgtcaccaatagagtatcgtactatcctcatatat 8374924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 8693454 - 8693327
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 144  Q
    |||||||||||||||||||| ||| |||||| ||||||   |||||||| | | ||||| ||  |||||| | ||| | |||| ||||||||||||||||    
T  8693454 ccgttttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagtgaatttggatttgtattgtatcgatgtactctatc 8693355  T
Q  145 aatttgagtgaataaacatcgtttattt 172  Q
    ||||||| |||||||| |||||||||||    
T  8693354 aatttgaatgaataaatatcgtttattt 8693327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 321
Target Start/End: Original strand, 29337556 - 29337678
Alignment:
Q  199 tcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccca 298  Q
    ||||||||||||||| || |||||||||||| | ||| ||||  |  || ||| | |||||||||||||| ||||||| |||||||||| | ||||||      
T  29337556 tcaagatatggaagttaagtttgacatgacctctagacagaaggccgttttggggtgtttgcaagcagcacatgctcaggattttcttctagctatcctg 29337655  T
Q  299 atttatgggttaggtcatcatat 321  Q
    ||| ||||||||||||| |||||    
T  29337656 attgatgggttaggtcagcatat 29337678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 2488461 - 2488587
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatca 145  Q
    ||||||||||||||||||||||| |||| | |||||| | | ||| || | | ||||| || |||| || | ||| | |||| |||||||||||||||||    
T  2488461 cgttttatgctattaacatagatgttgtaagtttgttcgcatatttatcctttttgtttttaatgactttggatttgtattgtatcgatgtactctatca 2488560  T
Q  146 atttgagtgaataaacatcgtttattt 172  Q
    |||||| |||||||| |||||||||||    
T  2488561 atttgaatgaataaatatcgtttattt 2488587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 4660767 - 4660893
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgta-ttgcattg-atcgatgtactctatca 145  Q
    ||||||||||||||||||| |||  ||||| ||||||  ||||||||| | | ||||| ||  |||||| | | ||| |||| |||||||||||||||||    
T  4660767 cgttttatgctattaacatggatgatgtgagtttgttcatagattcatcctttttgtttttagtgaatttggaattgtattgtatcgatgtactctatca 4660866  T
Q  146 atttgagtgaataaacatcgtttattt 172  Q
    |||||| ||||| || |||||||||||    
T  4660867 atttgaatgaatgaatatcgtttattt 4660893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 8644552 - 8644672
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattg-atcgatgtactctatcaa 146  Q
    ||||||||||||||||||| ||| |||||| |||||| | ||||||||   ||||||| ||  ||||||     ||||||| ||||||||||||||||||    
T  8644552 cgttttatgctattaacatggatgttgtgagtttgttcgcagattcatctttcttgtttttagtgaatt-----tgcattgtatcgatgtactctatcaa 8644646  T
Q  147 tttgagtgaataaacatcgtttattt 172  Q
    ||||| ||||| || ||| |||||||    
T  8644647 tttgaatgaattaatatcatttattt 8644672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 19402635 - 19402508
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 144  Q
    |||||||||||||||||||| |||| ||||| ||||||   | |||||| | | ||||| || | ||||| | ||| | |||| ||||||||||||||||    
T  19402635 ccgttttatgctattaacatggatactgtgagtttgttcacatattcatcctttttgtttttaacgaatttggatttgtattgtatcgatgtactctatc 19402536  T
Q  145 aatttgagtgaataaacatcgtttattt 172  Q
    ||||||| ||||| || |||||||||||    
T  19402535 aatttgaatgaatgaatatcgtttattt 19402508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 32120566 - 32120477
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttc 287  Q
    |||||||||||||||| || |||||||||||||||||| ||||  ||||| | |   ||||||||| || | ||||||| ||||||||||    
T  32120566 ttcaagatatggaagttaagtttgacatgaccacaagacagaagacaattataggatgtttgcaagtaggacatgctcatgattttcttc 32120477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 5417015 - 5416967
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    |||||||||||||||||||| ||| |||||| |||||| ||||||||||    
T  5417015 ccgttttatgctattaacatggatgttgtgagtttgttcgtagattcat 5416967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 5146348 - 5146391
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  5146348 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 5146391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 12654017 - 12653974
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  12654017 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 12653974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 15589824 - 15589781
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  15589824 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 15589781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 23654671 - 23654714
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  23654671 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 23654714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 30813479 - 30813522
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  30813479 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 30813522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 31804615 - 31804658
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||| | |||||||| |||||||||||    
T  31804615 atcgatgtactctatcaatttaaatgaataaatatcgtttattt 31804658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 6419640 - 6419603
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgttt 85  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  6419640 cgttttatgctattaacatggatactgtgaatttgttt 6419603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 23910816 - 23910925
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaaata 354  Q
    ||||||||||| || ||| | |  ||||| ||| ||||||||||||| ||| ||||||| | |||||||||||||| || |||| |||| || | |||||    
T  23910816 gtttgcaagcaacacatgtttagaatttttttctaactatcccaattgatgagttaggttagcatatgtcaccagtggaatattgtactctctttaaata 23910915  T
Q  355 tggccctatg 364  Q
    | ||| ||||    
T  23910916 tcgccttatg 23910925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 45232 - 45288
Alignment:
Q  292 tatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    |||||| ||| ||||||||||||| ||||||||| | || |||||| ||||||||||    
T  45232 tatcccgattgatgggttaggtcagcatatgtcatctgtggagtatcatactatcct 45288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 11321381 - 11321345
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgttt 168  Q
    |||||||||||||||||||| |||||||| |||||||    
T  11321381 gatgtactctatcaatttgaatgaataaatatcgttt 11321345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 19760189 - 19760217
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaat 157  Q
    |||||||||||||||||||||||||||||    
T  19760189 atcgatgtactctatcaatttgagtgaat 19760217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 346
Target Start/End: Complemental strand, 53171136 - 53170988
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    ||||| |||||||||| || |||||||| ||||| ||| ||||| ||||| | |   |||||||||||||| ||||||| |||||||||| | ||||||     
T  53171136 ttcaaaatatggaagttaagtttgacataaccacgagaaagaaaacaatttttggatgtttgcaagcagcacatgctcaggattttcttctagctatcct 53171037  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatc 346  Q
    |||| ||||||||| ||| ||||| ||| |||| ||||||  |||||||    
T  53171036 aattgatgggttagttcagcatatatcatcagtggagtatcgtactatc 53170988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 27091047 - 27091173
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatca 145  Q
    ||||||||||||||||||||||| |||| | |||||| | | ||| || | | ||||| || |||| || | ||| | |||| |||||||||||||||||    
T  27091047 cgttttatgctattaacatagatgttgtaagtttgttcgcatatttatcctttttgtttttaatgactttggatttgtattgtatcgatgtactctatca 27091146  T
Q  146 atttgagtgaataaacatcgtttattt 172  Q
    |||||| |||||||| |||||||||||    
T  27091147 atttgaatgaataaatatcgtttattt 27091173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 23809168 - 23809217
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaatt 247  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  23809168 ttcaagatatggaagtgaaatttgacatgaccataaggcagaaatcaatt 23809217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 16958115 - 16958023
Alignment:
Q  256 tttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    ||||||||||||| |||||| ||||||||||| | ||||||  ||| |||||| ||| || |||||||||||||| || || | |||||||||    
T  16958115 tttgcaagcagcacatgctctagattttcttctagctatcctcattgatgggtaaggccagcatatgtcaccagtggattactgtactatcct 16958023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 31522280 - 31522412
Alignment:
Q  43 ttttccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgta-ttgcattg-atcgatgtactc 140  Q
    |||||||||||||||||||||||  ||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | | ||| |||| ||||||||||||    
T  31522280 ttttccgttttatgctattaacaaggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggacttgtattgtatcgatgtactc 31522379  T
Q  141 tatcaatttgagtgaataaacatcgtttatttc 173  Q
    ||||||||||| ||||| || ||||||||||||    
T  31522380 tatcaatttgaatgaatgaatatcgtttatttc 31522412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 7083520 - 7083477
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  7083520 atcgatgtactctatcaatttgagtgaatgaatatcgtttattt 7083477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 8712930 - 8712973
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  8712930 atcgatgtactctatcaatttgaatgaataaatatcgtttattt 8712973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 24222506 - 24222372
Alignment:
Q  221 gacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcata 320  Q
    ||||||||||||||| |||||  |||| | | | ||||||||||| || |||||||| ||||||||  ||||||| | ||| ||||||||||    || |    
T  24222506 gacatgaccacaagagagaaagtaattgttgggtgtttgcaagcatcacatgctcaaaattttcttttaactatctctattgatgggttaggctgacaca 24222407  T
Q  321 tgtcaccagtagagtattatactatcctcaaatat 355  Q
    ||||||| ||||||||   |||||| |||||||||    
T  24222406 tgtcacccgtagagtaccgtactattctcaaatat 24222372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 46268005 - 46268130
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatca 145  Q
    ||||||||||||||||||| ||| |||||| ||||||   | |||||| | | ||||| || | ||||| ||||| | |||| |||||||||||||||||    
T  46268005 cgttttatgctattaacatggatgttgtgagtttgttac-atattcatccttgttgtttttgacgaatttgtatttgtattgtatcgatgtactctatca 46268103  T
Q  146 atttgagtgaataaacatcgtttattt 172  Q
    |||| | |||||||| |||||||||||    
T  46268104 atttaaatgaataaatatcgtttattt 46268130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 56461640 - 56461722
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtat 337  Q
    |||||||| ||||| |||||||||||||| ||| | |||||  |||| || |||||||||||||||| |||||| | ||||||    
T  56461640 gtttgcaaacagcacatgctcaagatttttttctagctatcataattgattggttaggtcatcatatatcaccaatggagtat 56461722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 346
Target Start/End: Complemental strand, 32335417 - 32335341
Alignment:
Q  270 atgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatc 346  Q
    ||||||| |||||||||| | ||||||| ||| |||| ||||||||||||||||||  ||| |||||  ||||||||    
T  32335417 atgctcatgattttcttctagctatccctattgatggattaggtcatcatatgtcattagtggagtaccatactatc 32335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 7084364 - 7084407
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  7084364 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 7084407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 13965965 - 13966008
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  13965965 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 13966008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 14346832 - 14346875
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  14346832 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 14346875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 24826061 - 24826104
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  24826061 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 24826104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 38434999 - 38435042
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  38434999 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 38435042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 42197975 - 42198018
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  42197975 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 42198018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 45350769 - 45350726
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  45350769 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 45350726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 45360248 - 45360205
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  45360248 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 45360205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 7860992 - 7860942
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattc 97  Q
    |||||||||||||||||||||||| |||||| ||| |||  ||||||||||    
T  7860992 ccgttttatgctattaacatagatgttgtgagtttatttacagattcattc 7860942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 25707084 - 25707002
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactat-cccaatttatgggttaggtcatcatatgtcaccagtagagta 336  Q
    |||||||||||||| ||||| | |||||||||| | |||  ||| ||| ||||||||||||| ||||||||||  ||||||||    
T  25707084 gtttgcaagcagcacatgctgaggattttcttctagctacacccgattgatgggttaggtcagcatatgtcacttgtagagta 25707002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 46775648 - 46775610
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttg 86  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  46775648 cgttttatgctattaacatagatgttgtgagtttgtttg 46775610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 6882366 - 6882406
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgttta 169  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  6882366 atcgatgtactctatcaatttgaatgaatgaatatcgttta 6882406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 41837739 - 41837779
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| |||||||  |||||||||||    
T  41837739 gatgtactctatcaatttgaatgaataattatcgtttattt 41837779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 53786289 - 53786207
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtat 337  Q
    ||||||||||| || |||||||||||||||||| | |||| |  ||| ||||||||||||| |||||||||||||| ||||||    
T  53786289 gtttgcaagcaccacatgctcaagattttcttctagctattctgattgatgggttaggtcagcatatgtcaccagtggagtat 53786207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 2192416 - 2192543
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 144  Q
    |||||||||||||||||||| ||| |||||||||||||   |||||||| | | || || ||   ||||| | ||| | |||| ||||||||||||||||    
T  2192416 ccgttttatgctattaacatggatgttgtgaatttgttcacagattcatcctttttatttttagcgaatttgaatttgtattgtatcgatgtactctatc 2192515  T
Q  145 aatttgagtgaataaacatcgtttattt 172  Q
    ||||||| ||||| || |||||||||||    
T  2192516 aatttgaatgaatgaatatcgtttattt 2192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 13701793 - 13701666
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 144  Q
    |||||||||||||||||||| ||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | ||| | |||| ||||||||||||||||    
T  13701793 ccgttttatgctattaacatggatgttgtgagtttgttcaaagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgatgtactctatc 13701694  T
Q  145 aatttgagtgaataaacatcgtttattt 172  Q
    ||||||| ||||| || |||||||||||    
T  13701693 aatttgaatgaatgaatatcgtttattt 13701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 105837 - 105712
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattg-atcgatgtactctatcaa 146  Q
    ||||||||||||||||||| |||  ||||| |||||| | |||||||| | | ||||||||  ||| || |  ||| |||| ||| ||||||||||||||    
T  105837 cgttttatgctattaacatggatgatgtgagtttgttcggagattcatcctttttgttcttagtgactttgatttgtattgtatcaatgtactctatcaa 105738  T
Q  147 tttgagtgaataaacatcgtttattt 172  Q
    ||||| ||||| || || ||||||||    
T  105737 tttgaatgaatgaatattgtttattt 105712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 4019922 - 4020042
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattg-atcgatgtactctatcaa 146  Q
    ||||||||||||||||||| ||| |||||| |||||||| ||||||||   | ||||| |||  ||||     |||||||| ||||||| ||||||||||    
T  4019922 cgttttatgctattaacatggatgttgtgagtttgtttgcagattcatcatttttgttttttgcgaat-----ttgcattgtatcgatgcactctatcaa 4020016  T
Q  147 tttgagtgaataaacatcgtttattt 172  Q
    ||||| ||||| || ||| |||||||    
T  4020017 tttgaatgaatgaatatcatttattt 4020042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 35236709 - 35236616
Alignment:
Q  255 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 348  Q
    ||||||||| || | ||| |||||||||||||||| || |||   || |||| |||||||| |||||||||||||| |||||  ||||||||||    
T  35236709 gtttgcaagtagtatatgatcaagattttcttcaagctgtcctggttgatggattaggtcagcatatgtcaccagtggagtaccatactatcct 35236616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 4082042 - 4082094
Alignment:
Q  43 ttttccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    |||||||||||||||||||||||| ||| |||||| |||||||  ||||||||    
T  4082042 ttttccgttttatgctattaacatggatgttgtgagtttgtttacagattcat 4082094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 1074601 - 1074558
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  1074601 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 1074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 11819506 - 11819549
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  11819506 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 11819549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 21803932 - 21803975
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||    
T  21803932 atcgatgtactctatcaatttgaatgaataaatatcttttattt 21803975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 24483403 - 24483360
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  24483403 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 24483360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 40012979 - 40012936
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||| |||||||||||||||| |||||||| |||||||||||    
T  40012979 atcgatatactctatcaatttgaatgaataaatatcgtttattt 40012936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 48401514 - 48401557
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  48401514 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 48401557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 337
Target Start/End: Complemental strand, 49018590 - 49018451
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 297  Q
    ||||||||||| |||| || |||||| ||||||| ||| | ||  ||||| | |   |||||||||||| | ||||||| |||||||||| | ||||||     
T  49018590 ttcaagatatgtaagttaagtttgacgtgaccacgagacaaaagacaattttaggatgtttgcaagcagtacatgctcatgattttcttctagctatcct 49018491  T
Q  298 aatttatgggttaggtcatcatatgtcaccagtagagtat 337  Q
     ||| ||||||||||||| |  ||||||| ||| ||||||    
T  49018490 gattgatgggttaggtcagcgcatgtcacaagtggagtat 49018451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 49627811 - 49627768
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  49627811 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 49627768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 55090406 - 55090363
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  55090406 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 55090363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 6903105 - 6903147
Alignment:
Q  53 tatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    |||||||||||| |||||||||||| |||||||||| ||||||    
T  6903105 tatgctattaacttagatattgtgagtttgtttgtaaattcat 6903147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 48855300 - 48855342
Alignment:
Q  130 tcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||||| ||||| || |||||||||||    
T  48855300 tcgatgtactctatcaatttgaatgaattaatatcgtttattt 48855342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 53962443 - 53962489
Alignment:
Q  49 gttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    ||||||| || ||||||| ||| ||||||||||||||||||||||||    
T  53962443 gttttatactgttaacatggatgttgtgaatttgtttgtagattcat 53962489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 44431475 - 44431438
Alignment:
Q  204 atatggaagtgaaatttgacatgaccacaagatagaaa 241  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  44431475 atatgaaagtaaaatttgacatgaccacaagatagaaa 44431438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 51990670 - 51990629
Alignment:
Q  43 ttttccgttttatgctattaacatagatattgtgaatttgtt 84  Q
    |||||||||||||||||||||||| ||| |||||| ||||||    
T  51990670 ttttccgttttatgctattaacattgatgttgtgagtttgtt 51990629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 54706437 - 54706396
Alignment:
Q  131 cgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||| ||||| || |||||||||||    
T  54706437 cgatgtactctatcaatttgaatgaatgaatatcgtttattt 54706396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 14585887 - 14585927
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  14585887 gatgtactctatcaatttgaatgaatgaatatcgtttattt 14585927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 19645615 - 19645655
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  19645615 gatgtactctatcaatttgaatgaatgaatatcgtttattt 19645655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 28995100 - 28995052
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    |||||||||||||||||||| ||| |||||| ||||||  |||||||||    
T  28995100 ccgttttatgctattaacatggatgttgtgagtttgttcatagattcat 28995052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 50981170 - 50981130
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  50981170 gatgtactctatcaatttgaatgaatgaatatcgtttattt 50981130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 51084304 - 51084264
Alignment:
Q  132 gatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  51084304 gatgtactctatcaatttgaatgaatgaatatcgtttattt 51084264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 20932 - 21058
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgta-ttgcattg-atcgatgtactctatca 145  Q
    ||||||||||||||||||| |||  ||||| |||||||  |||||||| | | ||||| ||  |||||| | | ||| |||| |||||||||||||||||    
T  20932 cgttttatgctattaacatggatgatgtgagtttgtttaaagattcatcctttttgtttttagtgaatttggaattgtattggatcgatgtactctatca 21031  T
Q  146 atttgagtgaataaacatcgtttattt 172  Q
    |||||| ||||| || |||||||||||    
T  21032 atttgaatgaatgaaaatcgtttattt 21058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 325
Target Start/End: Complemental strand, 20363 - 20232
Alignment:
Q  198 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgc----tcaagattttcttcaaacta 293  Q
    ||||||||||| |||| || |||||||||||||| ||| ||||  || || | ||| ||||||| ||| || ||||    ||| |||||||||  | |||    
T  20363 ttcaagatatgaaagttaagtttgacatgaccactagacagaagacagttttagagtgtttgcatgcaacacatgcatgctcaggattttcttgtagcta 20264  T
Q  294 tcccaatttatgggttaggtcatcatatgtca 325  Q
    |||||||| ||||||||||||| |||||||||    
T  20263 tcccaattgatgggttaggtcaacatatgtca 20232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 3850 - 3726
Alignment:
Q  47 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 144  Q
    |||||||||||||||||||| ||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | ||| | |||| ||||||||||||||||    
T  3850 ccgttttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttaccgaatttggatttgtattgtatcgatgtactctatc 3751  T
Q  145 aatttgagtgaataaacatcgttta 169  Q
    ||||||| ||||| || ||||||||    
T  3750 aatttgaatgaatgaatatcgttta 3726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 1099 - 1146
Alignment:
Q  48 cgttttatgctattaacatagatattgtgaatttgtttgtagattcat 95  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||    
T  1099 cgttttatgctattaacatagataccgtgagtttgttggtagattcat 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0999 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 2117 - 2156
Alignment:
Q  133 atgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  2117 atgtactctatcaatttgagtgaatgaatatcgtttattt 2156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 3317 - 3360
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  3317 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 3360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 35497 - 35540
Alignment:
Q  129 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 172  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  35497 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 35540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 35996 - 36044
Alignment:
Q  49 gttttatgctattaacatagatattgtgaatttgtttgtagattcattc 97  Q
    |||||||| ||||||||| ||| ||||||||||||||| | ||||||||    
T  35996 gttttatgttattaacatggatgttgtgaatttgtttgcatattcattc 36044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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