View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5258_low_29 (Length: 372)

Name: NF5258_low_29
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5258_low_29
NF5258_low_29
[»] chr3 (6 HSPs)
chr3 (9-359)||(13725271-13725621)
chr3 (45-98)||(47542534-47542587)
chr3 (46-102)||(1502574-1502630)
chr3 (50-94)||(49636837-49636881)
chr3 (47-98)||(18268012-18268063)
chr3 (66-98)||(28525028-28525060)
[»] chr5 (6 HSPs)
chr5 (46-97)||(28322241-28322292)
chr5 (46-98)||(35439301-35439353)
chr5 (56-105)||(9878032-9878081)
chr5 (67-100)||(16274345-16274378)
chr5 (66-98)||(4991153-4991185)
chr5 (46-110)||(39828466-39828530)
[»] chr7 (5 HSPs)
chr7 (47-133)||(27012125-27012211)
chr7 (45-92)||(40826514-40826561)
chr7 (47-98)||(38957349-38957401)
chr7 (41-81)||(13859516-13859556)
chr7 (62-98)||(24401845-24401881)
[»] chr4 (6 HSPs)
chr4 (53-98)||(37285250-37285296)
chr4 (69-128)||(6424180-6424239)
chr4 (47-102)||(27857938-27857993)
chr4 (46-96)||(843150-843200)
chr4 (56-97)||(2796556-2796597)
chr4 (66-123)||(47665840-47665897)
[»] chr2 (3 HSPs)
chr2 (40-102)||(8765404-8765466)
chr2 (51-96)||(35198240-35198285)
chr2 (62-98)||(28341340-28341376)
[»] chr6 (5 HSPs)
chr6 (52-98)||(32577471-32577517)
chr6 (50-97)||(6074517-6074564)
chr6 (62-96)||(4945276-4945310)
chr6 (47-97)||(6294544-6294594)
chr6 (56-93)||(34625744-34625781)
[»] chr1 (4 HSPs)
chr1 (66-123)||(13810517-13810574)
chr1 (46-92)||(1118409-1118455)
chr1 (47-91)||(6440863-6440907)
chr1 (46-98)||(26462652-26462704)
[»] chr8 (6 HSPs)
chr8 (32-110)||(6501480-6501559)
chr8 (44-98)||(3066040-3066094)
chr8 (47-135)||(1979413-1979502)
chr8 (62-95)||(25335906-25335939)
chr8 (42-98)||(18212325-18212381)
chr8 (44-84)||(25799146-25799186)


Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 13725271 - 13725621
Alignment:
Q  9 aacacagacactgggcatgaccctgacattgcacattgacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtgccagac 108  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13725271 aacacggacactgggcatgaccctgacatagcacattgacactgatgataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtgccagac 13725370  T
Q  109 accggacatgccttcaatcataggtatcagtactacaaagtttgaattgtttgaatcagaatcgcatttgtgtatgtgtacatgtcttccaattctaata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13725371 accggacatgccttcaatcataggtatcagtactacaaagtttgaattgtttgaatcagaatcgcatttgtgtatgtgtacatgtcttccaattctaata 13725470  T
Q  209 aatttgaaaattgattatattttactgcataagctataagtttagcttttaggtcggattgatttacggattggagtcaattttgaggccagaagccaaa 308  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13725471 aatttgaaaattgattataatttactgcataagctataagtttagcttttaggtcggattgatttacggattggagtcaattttgaggccagaagccaaa 13725570  T
Q  309 cataacaaatttgtggtaaaattacgtttgaatgatccaaacttgattgtg 359  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13725571 cataacaaatttatggtaaaattacgtttgaatgatccaaacttgattgtg 13725621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 47542534 - 47542587
Alignment:
Q  45 tgacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    |||||||||| ||||| |||||||||||| || ||||||| |||||||||||||    
T  47542534 tgacactggtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtc 47542587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 1502574 - 1502630
Alignment:
Q  46 gacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtg 102  Q
    ||||||||| ||||| | |||||||||  |||||||||| |||||||||||||||||    
T  1502574 gacactggtaataatctaagaaaatgacataattgaatgtaatcacatgtgtctgtg 1502630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 49636881 - 49636837
Alignment:
Q  50 ctggtgataatatgagaaaatgaattaattgaatgaaatcacatg 94  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||    
T  49636881 ctggtaataatttgagaaaatgaattaattgaatgtaatcacatg 49636837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 18268063 - 18268012
Alignment:
Q  47 acactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    |||||| | ||||| ||||||||||||||||||||| | |||||||||||||    
T  18268063 acactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtc 18268012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 28525028 - 28525060
Alignment:
Q  66 aaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    ||||||||||||||||||| |||||||||||||    
T  28525028 aaaatgaattaattgaatgtaatcacatgtgtc 28525060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 28322241 - 28322292
Alignment:
Q  46 gacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgt 97  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  28322241 gacactagtgataatttgagaaaatgaattaattgaatgtaatcacatgtgt 28322292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 35439353 - 35439301
Alignment:
Q  46 gacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    |||||| |||||||| ||| |||||||||||||||||||||||| ||||||||    
T  35439353 gacactagtgataatttgataaaatgaattaattgaatgaaatctcatgtgtc 35439301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 9878081 - 9878032
Alignment:
Q  56 ataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtgcca 105  Q
    ||||| |||||| |||||||||||||||| |||||| |||||| ||||||    
T  9878081 ataatttgagaatatgaattaattgaatgtaatcacttgtgtcagtgcca 9878032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 16274378 - 16274345
Alignment:
Q  67 aaatgaattaattgaatgaaatcacatgtgtctg 100  Q
    |||||||||||||||||| |||||||||||||||    
T  16274378 aaatgaattaattgaatgtaatcacatgtgtctg 16274345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 4991185 - 4991153
Alignment:
Q  66 aaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    ||||||||||||||||||| |||||||||||||    
T  4991185 aaaatgaattaattgaatgtaatcacatgtgtc 4991153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 39828466 - 39828530
Alignment:
Q  46 gacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtgccagacac 110  Q
    |||||| || ||||| |||||| ||||| |||||||||| || |||||||||  |||||||||||    
T  39828466 gacacttgtaataatttgagaatatgaaataattgaatgtaaccacatgtgttggtgccagacac 39828530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 27012125 - 27012211
Alignment:
Q  47 acactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtgccagacaccggacatgccttcaatcataggt 133  Q
    |||||||| ||||| |||||||||||||||||| |||| | |||||||||||| || | |||||| || |||||||| |||| ||||    
T  27012125 acactggtcataatttgagaaaatgaattaattaaatgtattcacatgtgtctatgtcggacaccagatatgccttcgatcagaggt 27012211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 40826514 - 40826561
Alignment:
Q  45 tgacactggtgataatatgagaaaatgaattaattgaatgaaatcaca 92  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||||    
T  40826514 tgacactggtgataatttgagaaaatgaattaattgaatataatcaca 40826561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 38957401 - 38957349
Alignment:
Q  47 acactggtgataatatgagaaaa-tgaattaattgaatgaaatcacatgtgtc 98  Q
    |||||||||||||| |||||||| | ||||||||||||| |||||||||||||    
T  38957401 acactggtgataatttgagaaaaataaattaattgaatgtaatcacatgtgtc 38957349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 13859516 - 13859556
Alignment:
Q  41 acattgacactggtgataatatgagaaaatgaattaattga 81  Q
    ||||||||||| || ||||| ||||||||||||||||||||    
T  13859516 acattgacactagtaataatttgagaaaatgaattaattga 13859556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 24401845 - 24401881
Alignment:
Q  62 tgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    |||||||||| |||||||||||| |||||||||||||    
T  24401845 tgagaaaatggattaattgaatgtaatcacatgtgtc 24401881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 37285296 - 37285250
Alignment:
Q  53 gtgataatatgagaaaatgaattaattgaatg-aaatcacatgtgtc 98  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  37285296 gtgataatatgagaaaatgaattaattgaatgtaaatcacatgtgtc 37285250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 6424239 - 6424180
Alignment:
Q  69 atgaattaattgaatgaaatcacatgtgtctgtgccagacaccggacatgccttcaatca 128  Q
    ||||||||||| |||| ||||||||||||| ||| ||||||||  |||||||||| ||||    
T  6424239 atgaattaattcaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatca 6424180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 27857993 - 27857938
Alignment:
Q  47 acactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtg 102  Q
    |||| ||||||| | ||||||||| ||||||||||||| ||||||| |||||||||    
T  27857993 acacaggtgatagtttgagaaaattaattaattgaatgtaatcacacgtgtctgtg 27857938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 843200 - 843150
Alignment:
Q  46 gacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtg 96  Q
    ||||||||| ||||| ||||||||||||||| ||||| | |||||||||||    
T  843200 gacactggtaataatttgagaaaatgaattatttgaacgtaatcacatgtg 843150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 2796556 - 2796597
Alignment:
Q  56 ataatatgagaaaatgaattaattgaatgaaatcacatgtgt 97  Q
    ||||| ||||||||||||||||||||||  ||||||||||||    
T  2796556 ataatttgagaaaatgaattaattgaatttaatcacatgtgt 2796597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 47665897 - 47665840
Alignment:
Q  66 aaaatgaattaattgaatgaaatcacatgtgtctgtgccagacaccggacatgccttc 123  Q
    ||||| |||||||| |||| ||||||||||||| |||   ||||||||||||||||||    
T  47665897 aaaattaattaattaaatgtaatcacatgtgtcggtgttggacaccggacatgccttc 47665840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 8765466 - 8765404
Alignment:
Q  40 cacattgacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtg 102  Q
    ||||||||||| ||||||||| | |||||| |||||||||||||| || ||||||||||||||    
T  8765466 cacattgacaccggtgataatttaagaaaacgaattaattgaatgtaagcacatgtgtctgtg 8765404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 35198285 - 35198240
Alignment:
Q  51 tggtgataatatgagaaaatgaattaattgaatgaaatcacatgtg 96  Q
    |||| ||||| | ||||||||||||||||||||| |||||||||||    
T  35198285 tggtcataatttaagaaaatgaattaattgaatgtaatcacatgtg 35198240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 28341340 - 28341376
Alignment:
Q  62 tgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    |||||||||||||||||| |||| |||||||||||||    
T  28341340 tgagaaaatgaattaattaaatgtaatcacatgtgtc 28341376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 32577517 - 32577471
Alignment:
Q  52 ggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    |||||| || ||||||||||||||||||||||| |||||||||||||    
T  32577517 ggtgatgatttgagaaaatgaattaattgaatgtaatcacatgtgtc 32577471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 6074517 - 6074564
Alignment:
Q  50 ctggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgt 97  Q
    ||||||||||| ||||||||||||||| ||||| | ||||||||||||    
T  6074517 ctggtgataatttgagaaaatgaattagttgaacgtaatcacatgtgt 6074564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 4945276 - 4945310
Alignment:
Q  62 tgagaaaatgaattaattgaatgaaatcacatgtg 96  Q
    ||||||||||||||||||||||| |||||||||||    
T  4945276 tgagaaaatgaattaattgaatgtaatcacatgtg 4945310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 6294594 - 6294544
Alignment:
Q  47 acactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgt 97  Q
    |||||| | ||||| ||||||||||||||||||||||| |||| |||||||    
T  6294594 acactgataataatttgagaaaatgaattaattgaatgcaatcgcatgtgt 6294544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 34625744 - 34625781
Alignment:
Q  56 ataatatgagaaaatgaattaattgaatgaaatcacat 93  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  34625744 ataatttgagaaaatgaattaattgaatgtaatcacat 34625781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 13810517 - 13810574
Alignment:
Q  66 aaaatgaattaattgaatgaaatcacatgtgtctgtgccagacaccggacatgccttc 123  Q
    |||||||||| |||||| | ||||||||||||| ||| ||||||||||||| ||||||    
T  13810517 aaaatgaatttattgaacgtaatcacatgtgtcggtgtcagacaccggacacgccttc 13810574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 1118455 - 1118409
Alignment:
Q  46 gacactggtgataatatgagaaaatgaattaattgaatgaaatcaca 92  Q
    ||||| ||||||||| ||| ||||||||||||||||||| |||||||    
T  1118455 gacacgggtgataatttgaaaaaatgaattaattgaatgtaatcaca 1118409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 6440907 - 6440863
Alignment:
Q  47 acactggtgataatatgagaaaatgaattaattgaatgaaatcac 91  Q
    |||||||| ||||| |||||||||||||| |||||||||| ||||    
T  6440907 acactggtaataatttgagaaaatgaatttattgaatgaagtcac 6440863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 26462704 - 26462652
Alignment:
Q  46 gacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    ||||||| | ||||| | |||||||||| |||||||||| |||||||||||||    
T  26462704 gacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgtc 26462652  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 6501480 - 6501559
Alignment:
Q  32 tgacattg-cacattgacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtctgtgccagacac 110  Q
    |||||||| ||| ||||||||||| ||||| ||||| |||||| ||||| |||| || |||||||||| ||| |||||||    
T  6501480 tgacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgtcggtgtcagacac 6501559  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 3066040 - 3066094
Alignment:
Q  44 ttgacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    ||||||| ||| ||||| |||||||||| |||||||||||| ||| |||||||||    
T  3066040 ttgacacaggtaataatttgagaaaatggattaattgaatgtaataacatgtgtc 3066094  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 1979413 - 1979502
Alignment:
Q  47 acactggtgataatatgagaaaatgaattaattgaatgaaatcacat-gtgtctgtgccagacaccggacatgccttcaatcataggtat 135  Q
    |||| ||| ||||| ||||||||| |||||||| |||| |||||||| |||||  || ||||||||||||| |||||  |||| ||||||    
T  1979413 acaccggtaataatttgagaaaattaattaattaaatgtaatcacatagtgtcaatgtcagacaccggacacgcctttgatcagaggtat 1979502  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 25335906 - 25335939
Alignment:
Q  62 tgagaaaatgaattaattgaatgaaatcacatgt 95  Q
    ||||||||||||||||||||||| ||||||||||    
T  25335906 tgagaaaatgaattaattgaatgcaatcacatgt 25335939  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 18212325 - 18212381
Alignment:
Q  42 cattgacactggtgataatatgagaaaatgaattaattgaatgaaatcacatgtgtc 98  Q
    ||||||||||||| | ||||||| ||||| ||||||||||| | ||||||| |||||    
T  18212325 cattgacactggtaaaaatatgaaaaaataaattaattgaacgtaatcacacgtgtc 18212381  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 25799146 - 25799186
Alignment:
Q  44 ttgacactggtgataatatgagaaaatgaattaattgaatg 84  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  25799146 ttgacattggtaataatttgagaaaatgaattaattgaatg 25799186  T

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