View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5258_low_3 (Length: 762)

Name: NF5258_low_3
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5258_low_3
NF5258_low_3
[»] chr4 (18 HSPs)
chr4 (98-753)||(11192162-11192817)
chr4 (226-745)||(11189715-11190233)
chr4 (200-667)||(11179027-11179491)
chr4 (286-705)||(11197554-11197957)
chr4 (395-595)||(11166205-11166405)
chr4 (261-640)||(11160539-11160933)
chr4 (226-356)||(11166063-11166190)
chr4 (362-671)||(11174532-11174856)
chr4 (489-563)||(5646597-5646671)
chr4 (489-563)||(11182099-11182173)
chr4 (286-413)||(11928896-11929023)
chr4 (17-71)||(11184939-11184993)
chr4 (35-99)||(11191840-11191910)
chr4 (550-629)||(11240855-11240934)
chr4 (99-172)||(11178938-11179011)
chr4 (715-745)||(11179541-11179571)
chr4 (351-433)||(11211040-11211122)
chr4 (363-413)||(11931879-11931929)
[»] chr5 (5 HSPs)
chr5 (286-403)||(8992505-8992622)
chr5 (359-444)||(36686790-36686875)
chr5 (500-667)||(36686949-36687116)
chr5 (359-456)||(35390399-35390496)
chr5 (489-561)||(8991411-8991483)


Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 98 - 753
Target Start/End: Original strand, 11192162 - 11192817
Alignment:
Q  98 caaaatataataatgcattatactttattcgataatcataaaaaatcacattttagttccttcatgaataaaaccgagaaattaactaacacatagaaga 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192162 caaaatataataatgcattatactttattcgataatcataaaaaagcacattttagttccttcatgaataaaaccgagaaattaactaacacatagaaga 11192261  T
Q  198 ttaaataaactacatattcattttataatcattcaaaagcccaactattttcacaacgagctgcctccttttcctcgggagtgtaatcatcattcttaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  11192262 ttaaataaactacatattcattttataatcattcaaaagcccaactattttcacagcgagctgcctcctcttcctcgggagtgtaatcatcattcttaat 11192361  T
Q  298 gttgaaaatcttgcgaatctcctccggtgtcttgtccttgatgttgtctgctgcagtcatgcatgtaagatccaacagacttttgatgtttaaatagtta 397  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11192362 gttgaaaatcttgcgaatctcctccggtgtcttgtccttgatattgtctgctgcagtcatgcatgtaagatccaacagacttttgatgtttagatagtta 11192461  T
Q  398 gcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttct 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11192462 gcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagcgtcccacttcctaagctcatcagaacttacatcatcagcatgtttct 11192561  T
Q  498 tgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgt 597  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  11192562 tgcaatactcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacagtcatcgtctatcaaaagcttgatcgt 11192661  T
Q  598 ctgggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactcttaaggatgatcttcttcgacgacgatgatgccatgtctttgaaa 697  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11192662 ctgggattgcattgccaccgcctcttctatttcaaaggtctcgccctcataactcttaaggatgatcttcttcgacgacaatgatgccatgtctttgaaa 11192761  T
Q  698 ccttaaatttgtatctatctctgagtttgaaaagaataggcgtgagtgagtattat 753  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192762 ccttaaatttgtatctatctctgagtttgaaaagaataggcgtgagtgagtattat 11192817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 226 - 745
Target Start/End: Original strand, 11189715 - 11190233
Alignment:
Q  226 tcattcaaaagcccaactattttcacaacgagctgcctccttttcctcgggagtgtaatcatcattcttaatgttgaaaatcttgcgaatctcctccggt 325  Q
    ||||||||| |||||||||||||| | |||| || |||||||||||||||| ||||| |||||   |||||||||||||||||||| |||||||||||||    
T  11189715 tcattcaaaggcccaactattttcgcgacgaacttcctccttttcctcgggggtgtactcatc---cttaatgttgaaaatcttgcaaatctcctccggt 11189811  T
Q  326 gtcttgtccttgatgttgtctgctgcagtcatgcatgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtat 425  Q
    ||||||||||||||||||| ||||| |||||| |||  ||||||  | ||||| |||||||  |||||  | |||||| ||||||| || ||||||||||    
T  11189812 gtcttgtccttgatgttgtttgctgtagtcatacatccaagatcatatagactcttgatgtccaaataccttgcagccaagatgagtttcaagagagtat 11189911  T
Q  426 cttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttcttgcaatattcaataaccatggccaagat 525  Q
    ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||    
T  11189912 cttgatcgacctggacaaattcagcgtcccacttcctaagctcatcagaacttacagcatcaacatgtttcttgcaatactcaataaccatggccaagat 11190011  T
Q  526 cttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttct 625  Q
    |||||  ||||||||||||||||||||| ||||||| |||||||||| |||| | |||||| ||||||||||||| ||||| ||||||||| |||||||     
T  11190012 cttgcctgttacgttcgaaatagggatttcagtgtcattggcacactggtcgccgatcaaatgcttgatcgtctgcgattgaactgccaccgcctcttcg 11190111  T
Q  626 atttcaaaggtctcgccctcataactcttaaggatgatcttcttcgacgacgatgatgccatgtctttgaaaccttaaa--tttgtatctatctctgagt 723  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||   || ||||||||||||  || |||||| ||||  ||||| ||| |||||||||    
T  11190112 atttcaaaggtctcgccttcagaactcttcaggatgatcttcttcattgatgatgatgccatgaattagaaaccctaaatttttgtgtctttctctgagt 11190211  T
Q  724 ttgaaaagaataggcgtgagtg 745  Q
    ||||||||||||||||||||||    
T  11190212 ttgaaaagaataggcgtgagtg 11190233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 200 - 667
Target Start/End: Original strand, 11179027 - 11179491
Alignment:
Q  200 aaataaactacatattcattttataatcattcaaaagcccaactattttcacaacgagctgcctccttttcctcgggagtgtaatcatcattcttaatgt 299  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||||||| | |||| || |||||| |||||| || |||||||||   ||||||||||    
T  11179027 aaatagactacagattcattctataatcattcaaaagcccaactattttcgcgacgaacttcctcctcttcctctggggtgtaatca---ttcttaatgt 11179123  T
Q  300 tgaaaatcttgcgaatctcctccggtgtcttgtccttgatgttgtctgctgcagtcatgcatgtaagatccaacagacttttgatgtttaaatagttagc 399  Q
    |||||||||||||||||||||| |||||||||||||||||||||||   || ||||||||| ||||||||||| || || ||||||||||||||||| ||    
T  11179124 tgaaaatcttgcgaatctcctctggtgtcttgtccttgatgttgtccattgtagtcatgcaggtaagatccaataggctcttgatgtttaaatagttggc 11179223  T
Q  400 agccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttcttg 499  Q
    ||||  |||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||  |||||||||||||||| || ||||| |||||||||||    
T  11179224 agccatgatgagattgaagagagtattttgatcaaccttgacaaattcagcgtcccacttctcaagctcatcagaacttgcagcatcaacatgtttcttg 11179323  T
Q  500 caatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtct 599  Q
    ||||| ||||||||||| |||||||||||||  ||||| ||||  | ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  11179324 caatactcaataaccatagccaagatcttgccagttacattcgttaaagggattccagtgtcgttggcacactcctcgtcgatcaaatgcttgatcgtct 11179423  T
Q  600 gggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactcttaaggatgatcttc 667  Q
    ||||||||| ||||||| ||| ||| |||| |||||||||||| ||| ||||||| | ||||||||||    
T  11179424 gggattgcattgccaccgccttttcgattttaaaggtctcgccatcagaactcttcaagatgatcttc 11179491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 286 - 705
Target Start/End: Original strand, 11197554 - 11197957
Alignment:
Q  286 atcattcttaatgttgaaaatcttgcgaatctcctccggtgtcttgtccttgatgttgtctgctgcagtcatgcatgtaagatccaacagacttttgatg 385  Q
    ||||||||||||||||||||||||| |||||||| ||  ||| ||||||||||||||| |||||||||||||  ||||||||||||| ||||| || |||    
T  11197554 atcattcttaatgttgaaaatcttgtgaatctccgccaatgtattgtccttgatgttgcctgctgcagtcatcaatgtaagatccaaaagactcttaatg 11197653  T
Q  386 tttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcat 485  Q
    |  |||||||||| || |||||||||| |||| | |||||||||||||| |||||| || |||| |||||| ||||||||| ||||| |||||  | |||    
T  11197654 tccaaatagttagaagtcgagatgagactgaacatagtatcttgatcaa-ctggacgaattcagcgtcccaattcctaagcccatcataacttttagcat 11197752  T
Q  486 cagcatgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaa 585  Q
     | |||||||||||||||| ||||||| ||| ||||||||||||   |||  ||||||||||| ||||||| | | ||||||||| || | ||  |||||    
T  11197753 taacatgtttcttgcaatactcaataaacatagccaagatcttgtcagttgtgttcgaaatagtgattccatttttgttggcacattcattgttgatcaa 11197852  T
Q  586 aagcttgatcgtctgggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactcttaaggatgatcttctt---cgacgacgatgat 682  Q
    | |||||||||||| |||||||                  ||||||||||||||||||||||||||||| ||||||||||||||    ||||| ||||||    
T  11197853 atgcttgatcgtctaggattgc------------------atttcaaaggtctcgccctcataactcttcaggatgatcttctttgaggacgatgatgat 11197934  T
Q  683 gccatgtctttgaaaccttaaat 705  Q
    |||||| |||||||||| |||||    
T  11197935 gccatgactttgaaaccgtaaat 11197957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 395 - 595
Target Start/End: Original strand, 11166205 - 11166405
Alignment:
Q  395 ttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtt 494  Q
    ||||||||| ||||||| || ||||||||||||||||||| || | |||| |||| ||||||||||  ||| |||||||||||| || ||||| ||||||    
T  11166205 ttagcagccaagatgagtttcaagagagtatcttgatcaatcttgtcaaattcagcgtcccacttctcaagttcatcagaacttgcagcatcaacatgtt 11166304  T
Q  495 tcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgat 594  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| ||||||  |||||| ||| |||    
T  11166305 tcttgcaatactcaataaccatagccaagatcttgccggttacgttcgaaatagggattccaatgtggttggtacacccgtcgtggatcaaatgctcgat 11166404  T
Q  595 c 595  Q
    |    
T  11166405 c 11166405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 261 - 640
Target Start/End: Complemental strand, 11160933 - 11160539
Alignment:
Q  261 cctccttttcctcgggagtgtaatcatcattcttaatgttgaaaatcttgcgaatctcctccggtgtcttgtccttgatgttgtctgctgcagtcatgca 360  Q
    |||||| |||||| ||||||||||||| | |   |||||||||| |||| |||||||||||||| ||| |  |||||||  |||||||| ||||| ||||    
T  11160933 cctcctcttcctccggagtgtaatcattaat---aatgttgaaagtcttacgaatctcctccggcgtcctacccttgatcatgtctgctacagtcttgca 11160837  T
Q  361 tgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttc 460  Q
    ||||||||||| ||||||||||||||||| |||||| |||||| ||||||||| |||||| |||||||| ||||||| ||| || ||||||||||| ||     
T  11160836 tgtaagatccagcagacttttgatgtttagatagtttgcagccaagatgagatcgaagagggtatcttggtcaaccttgacgaattcagtgtcccatttg 11160737  T
Q  461 ctaa---------------gc---tcatcagaacttacatcatcagcatgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcg 542  Q
     |||               ||   |||||||||||   | | ||| |||| ||||||||||  ||||||||||| ||||||||||||| ||| ||||| |    
T  11160736 ttaatttcatcttcagagggcttttcatcagaactggtagcgtcaacatgcttcttgcaatgctcaataaccatagccaagatcttgccggtaacgtttg 11160637  T
Q  543 aaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctatttcaaaggtctcg 640  Q
     || |||||||||| |||||| |||||| | ||| || |||||| |||||||||| || ||||  | ||||||| ||| ||| ||||| |||||||||    
T  11160636 gaagagggattccactgtcgtcggcacaattgtcatcgatcaaatgcttgatcgtttgagattctaatgccaccgccttttcaatttcgaaggtctcg 11160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 226 - 356
Target Start/End: Original strand, 11166063 - 11166190
Alignment:
Q  226 tcattcaaaagcccaactattttcacaacgagctgcctccttttcctcgggagtgtaatcatcattcttaatgttgaaaatcttgcgaatctcctccggt 325  Q
    ||||||||| |||||||||||||| | |||| || ||||||||||| |||  |||||||||   |||||||||||||||||||||||||||||||| |||    
T  11166063 tcattcaaaggcccaactattttcgcgacgaacttcctccttttccgcggaggtgtaatca---ttcttaatgttgaaaatcttgcgaatctcctctggt 11166159  T
Q  326 gtcttgtccttgatgttgtctgctgcagtca 356  Q
    ||||||||||||||||||| ||||| |||||    
T  11166160 gtcttgtccttgatgttgtttgctgtagtca 11166190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 362 - 671
Target Start/End: Complemental strand, 11174856 - 11174532
Alignment:
Q  362 gtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcc 461  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| ||||||||| |||||| || ||||||||||||||||| || ||||  |||||||||     
T  11174856 gtaagatccaaaagactcttgatgttcaaatagttagcagccaagatgagatcgaagagggtttcttgatcaacctggacgaattcagcatcccacttct 11174757  T
Q  462 taagctcatc------------------agaacttacatcatcagcatgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcga 543  Q
    |||| |||||                   || ||| |||  ||| |||||||||||||||| || |||||| | |||||||||||||  ||||| ||||     
T  11174756 taagttcatcctccggtggtttttcattggatcttgcatattcaacatgtttcttgcaatactcgataaccttagccaagatcttgccagttacattcgg 11174657  T
Q  544 aatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctatttcaaaggtctcgccc 643  Q
    |||||||||||||||||||| ||   |  | || || |||||| ||||||| || || ||||  | ||||||  ||||||| || |||||||| || ||     
T  11174656 aatagggattccagtgtcgtcgg---aaacatcatcgatcaaatgcttgatagtttgagattctaatgccactgcctcttcgatatcaaaggtttcaccg 11174560  T
Q  644 tcataactcttaaggatgatcttcttcg 671  Q
    ||||||||||| ||| ||||||||||||    
T  11174559 tcataactcttgagggtgatcttcttcg 11174532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 5646671 - 5646597
Alignment:
Q  489 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgt 563  Q
    |||||||||||||||| ||||| ||||| ||||  |||| |||||||||||| || |||||||||||||||||||    
T  5646671 catgtttcttgcaatactcaattaccatagccagaatctcgctggttacgtttgagatagggattccagtgtcgt 5646597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 11182173 - 11182099
Alignment:
Q  489 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgt 563  Q
    |||||||||||||||| || |||||| | |||||||||||||  ||||| |||| ||||||||||||||||||||    
T  11182173 catgtttcttgcaatactcgataaccttagccaagatcttgccagttacattcggaatagggattccagtgtcgt 11182099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 286 - 413
Target Start/End: Original strand, 11928896 - 11929023
Alignment:
Q  286 atcattcttaatgttgaaaatcttgcgaatctcctccggtgtcttgtccttgatgttgtctgctgcagtcatgcatgtaagatccaacagacttttgatg 385  Q
    |||||||  ||||||||| ||||  ||||||| ||| ||||||||||| || ||  |||||||| ||||| |||| ||||||||  ||| ||||||||||    
T  11928896 atcattcacaatgttgaacatctcacgaatctgctctggtgtcttgtcgttcatcatgtctgctacagtcttgcacgtaagatcgtacaaacttttgatg 11928995  T
Q  386 tttaaatagttagcagccgagatgagat 413  Q
    |  ||| |||| ||||| ||||||||||    
T  11928996 tccaaaaagtttgcagcagagatgagat 11929023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 11184939 - 11184993
Alignment:
Q  17 tatagtataaaaacaaggaaacaaatgaaataaacatgtcaactttatgaaataa 71  Q
    |||||||||||||| ||||||||| |||||||||||||| || ||||||||||||    
T  11184939 tatagtataaaaacgaggaaacaactgaaataaacatgtgaaatttatgaaataa 11184993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 11191840 - 11191910
Alignment:
Q  35 aaacaaatgaaataaacatgtcaactttatgaaataa------acaaatatttagcagctataccacagca 99  Q
    |||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||    
T  11191840 aaacaagtgaaataaacatgtcaactttatgaaataagtactgtcaaatatttagcagctataccgcagca 11191910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 550 - 629
Target Start/End: Original strand, 11240855 - 11240934
Alignment:
Q  550 gattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctattt 629  Q
    ||||||| |||||||| |||||||||| || |||||| ||||||| || ||||||| ||  |||||||||||||| ||||    
T  11240855 gattccaatgtcgttgacacactcgtcatcaatcaaatgcttgatagtatgggattccaaagccaccacctcttcaattt 11240934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 11178938 - 11179011
Alignment:
Q  99 aaaatataataatgcattatactttattcgataatcataaaaaatcacattttagttccttcatgaataaaacc 172  Q
    |||||||||||||  || | ||||||||| |||||||| |||||  | |||||||||| |||||||||||||||    
T  11178938 aaaatataataatcgataaaactttattccataatcattaaaaagaaaattttagttctttcatgaataaaacc 11179011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 745
Target Start/End: Original strand, 11179541 - 11179571
Alignment:
Q  715 tctctgagtttgaaaagaataggcgtgagtg 745  Q
    |||||||||||||||||||||||||||||||    
T  11179541 tctctgagtttgaaaagaataggcgtgagtg 11179571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 11211122 - 11211040
Alignment:
Q  351 cagtcatgcatgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatca 433  Q
    ||||| |||| ||||||||||| ||| | |||| ||  ||||||||||||||| | ||||||| |||||| |||| |||||||    
T  11211122 cagtcttgcaagtaagatccaaaagagtcttgaagtccaaatagttagcagccaacatgagatcgaagagggtattttgatca 11211040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 11931879 - 11931929
Alignment:
Q  363 taagatccaacagacttttgatgtttaaatagttagcagccgagatgagat 413  Q
    |||||||||| ||||| ||||||| ||||||||| ||||||||||| ||||    
T  11931879 taagatccaatagactcttgatgtctaaatagttggcagccgagataagat 11931929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 8992622 - 8992505
Alignment:
Q  286 atcattcttaatgttgaaaatcttgcgaatctcctccggtgtcttgtccttgatgttgtctgctgcagtcatgcatgtaagatccaacagacttttgatg 385  Q
    ||||||||||||||| ||  |||||||||||||||| ||||||||  |||||||  |||||||  |||||  |||||||||||||| |||  | |||||     
T  8992622 atcattcttaatgttaaaggtcttgcgaatctcctcaggtgtcttccccttgatcatgtctgccacagtctggcatgtaagatccagcaggttcttgata 8992523  T
Q  386 tttaaatagttagcagcc 403  Q
    || ||||| |||||||||    
T  8992522 ttcaaataattagcagcc 8992505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 444
Target Start/End: Original strand, 36686790 - 36686875
Alignment:
Q  359 catgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaa 444  Q
    ||||||||||||||||   | |||||||| |||||||| ||||||||||| |||| || ||| |||||||||||||||| ||||||    
T  36686790 catgtaagatccaacaagttcttgatgttcaaatagtttgcagccgagatcagatcgaggagtgtatcttgatcaaccttgacaaa 36686875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 500 - 667
Target Start/End: Original strand, 36686949 - 36687116
Alignment:
Q  500 caatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtct 599  Q
    ||||||||||||||| | |||||||| ||||| ||||| || |||| |||||||||| | | || | |||| || || || || ||||| |||||||| |    
T  36686949 caatattcaataacctttgccaagatgttgctagttacatttgaaagagggattccactatagtcgacacaatcatcctcgattaaaagtttgatcgttt 36687048  T
Q  600 gggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactcttaaggatgatcttc 667  Q
    | |||| || ||||||  |||| || |||||||||||||| || ||  ||||||| ||| ||||||||    
T  36687049 gtgattccaatgccactgcctcgtcgatttcaaaggtctccccgtcggaactcttcagggtgatcttc 36687116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 456
Target Start/End: Original strand, 35390399 - 35390496
Alignment:
Q  359 catgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtccca 456  Q
    ||||||||||||||||  || |||||||| |||||||| |||| | ||||||||| || ||| ||| | |||||||||| ||  || |||||||||||    
T  35390399 catgtaagatccaacaagctcttgatgttcaaatagtttgcagacaagatgagatcgaggagcgtagcctgatcaaccttgatgaattcagtgtccca 35390496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 561
Target Start/End: Complemental strand, 8991483 - 8991411
Alignment:
Q  489 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtc 561  Q
    |||| ||||||||||| ||||| ||| | ||||||||||||||||| ||||| | || |||||||||| ||||    
T  8991483 catgcttcttgcaatactcaatcaccttcgccaagatcttgctggtaacgttgggaagagggattccactgtc 8991411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University