View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_36 (Length: 352)
Name: NF5258_low_36
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 113 - 336
Target Start/End: Original strand, 33835857 - 33836080
Alignment:
| Q |
113 |
aagccaaaaacgttgcaagtcaagaaactacataagaaaatactatgctttatgagttgagattcaatgaggaaattgaaacgtaccaaattaaaaatct |
212 |
Q |
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| T |
33835857 |
aagccaaaaacgttgcaagtcaagaaactacataagaaaatactatgctttatgagttgagattcaatgaggaaattgaaacgtaccaaattaaaaaact |
33835956 |
T |
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| Q |
213 |
aacttcctcttgaatagaggaattgagaatgagatgaactaatattaggatggagtatacagtgatagatgcaaacgtatatatattaagattgagtaca |
312 |
Q |
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| T |
33835957 |
aacttcctcttgaatagaggaattgagaatgagatgaactaatatgaggatggagtatacagtgatagatgcaaacgtatatatattaagattgagtaca |
33836056 |
T |
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| Q |
313 |
aaaatggatgtatgtgcaaattac |
336 |
Q |
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| T |
33836057 |
aaaatggatgtatgtgcaaattac |
33836080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 33835711 - 33835804
Alignment:
| Q |
8 |
gtgcatgtttagattaaatattttagcaaaatcacttaagattttgtggttggtaatggtatatatggtgaaaattgaaacactaattaaagtt |
101 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835711 |
gtgcatgtttagattaaagattttagcaaaaccacttaagattttgtggttggtaatggtatatatggtgaaaattgaaacactaattaaagtt |
33835804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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