View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_4 (Length: 659)
Name: NF5258_low_4
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_4 |
 | |
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| [»] scaffold0221 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 11 - 643
Target Start/End: Complemental strand, 14458229 - 14457597
Alignment:
| Q |
11 |
cacagagactaggattcccagaaaaagtgatagcttcaaaagttgtcatatggcctgtataaggaatgacaccagacaggttattattggacaaatctag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458229 |
cacagagactaggattcccagaaaaagtgatagcttcaaaagttgtcatatggcctgtataaggaatgacaccagacaggttattattggacaaatctag |
14458130 |
T |
|
| Q |
111 |
ggaccccaaaaatgacaaggaagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458129 |
ggaccccaaaaatgacaaggaagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatg |
14458030 |
T |
|
| Q |
211 |
gtttcgtgaatttggccagttatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458029 |
gtttcgtgaatttggccagttatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgt |
14457930 |
T |
|
| Q |
311 |
tatcagaaaggtctatgctagtaacaagggaaagagtcgtggtatacgttaacatttggtctttcgtagacacatccaagctttcttcatagtagtgttc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14457929 |
tatcagaaaggtctatgctagtaacaagggaaagagtcgtggtatacgttaacatttggtctttcgtagacacatccaagctttcttcatagtagtgttc |
14457830 |
T |
|
| Q |
411 |
ttcaaattttccatacagtaaatatttatttttcttctccacttgggctattgctttcagatcacccaaactagctggaatgctgccggtaaattcattt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14457829 |
ttcaaattttccatacagtaaatatttatttttcttctccacttgggctattgctctcagatcacccaaactagctggaatgctgccggtaaattcattt |
14457730 |
T |
|
| Q |
511 |
ttagcaaggtcaagcacttgtaatgaacgtagctttgaaagctcaggtggtaattcaccaaaaaatgcattagacctcaaaacaagaattctaagaaatg |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14457729 |
ttagcaaggtcaagcacttgtaatgaacgtagctttgaaagctcaggtggtaattcaccaaaaaatgcattagacctcaaaacaagaattctaagaaatg |
14457630 |
T |
|
| Q |
611 |
gtaaaccttccccaaaccaagttggaataatac |
643 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |
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| T |
14457629 |
gaaaaccttccccaaaccaagttggaataatac |
14457597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 4 - 640
Target Start/End: Original strand, 14493114 - 14493750
Alignment:
| Q |
4 |
ggaggagcacagagactaggattcccagaaaaagtgatagcttcaaaagttgtcatatggcctgtataaggaatgacaccagacaggttattattggaca |
103 |
Q |
| |
|
|||||| ||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||| ||||| |
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| T |
14493114 |
ggaggaccacagagacccgaattcctcgaaaaagtcatagcttcaaaagttgtcatatggcctgtatatggaatgacacccgagaggttgttatcggaca |
14493213 |
T |
|
| Q |
104 |
aatctagggaccccaaaaatgacaaggaagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatt |
203 |
Q |
| |
|
|||| | |||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
14493214 |
aatccaaggaccctaaaaatgacaaggaagacaagcttgaaggaattgttccggaaagttggttgtttgagagatcaagggatgataattgaagcagatt |
14493313 |
T |
|
| Q |
204 |
tgacatggtttcgtgaatttggccagttatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtg |
303 |
Q |
| |
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||| ||||||| ||||||| ||| |||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||| |||||||| ||| || |
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| T |
14493314 |
tgaaatggttttaggaatttgaccacttatatggtttcttgacaagttgagaaccaccaaaccaaatagttttgttatctcatttggaatatttccactg |
14493413 |
T |
|
| Q |
304 |
aagttgttatcagaaaggtctatgctagtaacaagggaaagagtcgtggtatacgttaacatttggtctttcgtagacacatccaagctttcttcatagt |
403 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||||||||| ||| ||||||| ||| |||||||| |||| | | |||| ||| | ||||||||| | |
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|
| T |
14493414 |
aagttattattagaaaggtctatgcttgtaacaagggaaagggtcttggtatattttagcatttggtttttcacatagacattcaatccttcttcataat |
14493513 |
T |
|
| Q |
404 |
agtgttcttcaaattttccatacagtaaatatttatttttcttctccacttgggctattgctttcagatcacccaaactagctggaatgctgccggtaaa |
503 |
Q |
| |
|
| || | | ||| |||||||| ||| ||||||||||||||| ||||| |||||||||||| | |||| |||| || | |||||| ||||| | || |
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|
| T |
14493514 |
aatgaccacgatattctccatacaataagtatttatttttcttccgcacttcggctattgcttttaaatcagccaagcttgttggaattctgccactcaa |
14493613 |
T |
|
| Q |
504 |
ttcatttttagcaaggtcaagcacttgtaatgaacgtagctttgaaagctcaggtggtaattcaccaaaaaatgcattagacctcaaaacaagaattcta |
603 |
Q |
| |
|
|||||| ||||||||||||| ||||| || |||| ||| ||||||| |||| ||| ||||| ||| ||||||||||||||||||||| ||||||||| |
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|
| T |
14493614 |
gtcatttctagcaaggtcaaggacttgcaaagaacctagttttgaaaactcaagtgacaattctccataaaatgcattagacctcaaaatgagaattcta |
14493713 |
T |
|
| Q |
604 |
agaaatggtaaaccttccccaaaccaagttggaataa |
640 |
Q |
| |
|
||| | || |||||||||||||||||||||||||||| |
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|
| T |
14493714 |
agataaggaaaaccttccccaaaccaagttggaataa |
14493750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 4 - 640
Target Start/End: Original strand, 14468696 - 14469332
Alignment:
| Q |
4 |
ggaggagcacagagactaggattcccagaaaaag-tgatagcttcaaaagttgtcatatggcctgtataaggaatgacaccagacaggttattattggac |
102 |
Q |
| |
|
|||||| |||| ||||| |||||||||| ||||| |||| || ||||| |||||||| |||||||| |||||||||||||| ||||| || | |||| |
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|
| T |
14468696 |
ggaggaccacaaagactcggattcccagtaaaagctgat-gcatcaaaggttgtcatttggcctgtgtaaggaatgacaccctgaaggttgttgtgggac |
14468794 |
T |
|
| Q |
103 |
aaatctagggaccccaaaaatgacaaggaagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagat |
202 |
Q |
| |
|
|| | |||| |||||||||||||||||||| ||| ||| ||||||| ||||||||| ||||| | ||||||||||||||| || |||| |||||| |
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|
| T |
14468795 |
aagtttaggccccccaaaaatgacaaggaaggcaaacttaaaggaatcttaccagaaagtcggttgctcgagagatcaagagattctagttgatgcagat |
14468894 |
T |
|
| Q |
203 |
ttgacatggtttcgtgaatttggccagttatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagt |
302 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||| | |
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|
| T |
14468895 |
ttgacatggtttcaggaattttgccagttatatggtttcttgacaagttgagaatcatcaaaccagatagttttgttatttcattgggaatatttccaat |
14468994 |
T |
|
| Q |
303 |
gaagttgttatcagaaaggtctatgctagtaacaagggaaagagtcgtggtatacgttaacatttggtctttcgtagacacatccaagctttcttcatag |
402 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| || || ||||||| || |||||| ||| ||||||| ||| |
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|
| T |
14468995 |
gaagttgttatgagaaaggtctatgccagtaacaagggaaagagtcttggtatactctactcttcggtcttttatatacacattcaaactttctttgtag |
14469094 |
T |
|
| Q |
403 |
tagtgttcttcaaattttccatacagtaaatatttatttttcttctccacttgggctattgctttcagatcacccaaactagctggaatgctgccggtaa |
502 |
Q |
| |
|
||||| |||||| | | |||||| ||||| |||||||||||||||| |||||||||| ||||||| |||||| || || | ||||||||| || || | |
|
|
| T |
14469095 |
tagtgatcttcagaatctccatagagtaagtatttatttttcttctgtgcttgggctatagctttcaaatcaccaaagcttgttggaatgcttccagtga |
14469194 |
T |
|
| Q |
503 |
attcatttttagcaaggtcaagcacttgtaatgaacgtagctttgaaagctcaggtggtaattcaccaaaaaatgcattagacctcaaaacaagaattct |
602 |
Q |
| |
|
| |||||||| | |||||| | ||||| | ||| | ||| |||||||| | |||||| |||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
14469195 |
agtcatttttggaaaggtcgatgacttgcagtgagcctagttttgaaagattaggtggcaattcaccggaaaattcattagacctcaaaacaagaattct |
14469294 |
T |
|
| Q |
603 |
aagaaatggtaaaccttccccaaaccaagttggaataa |
640 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14469295 |
tagaaatggaaaaccttccccaaaccaagttggaataa |
14469332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 10245 - 10164
Alignment:
| Q |
89 |
ggttattattggacaaatctagggaccccaaaaatgacaaggaagacaagcttgaaggaattggtccagaaagttggttgtt |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10245 |
ggttattattggacaaatctagggaccccaaaaatgacaaggaagacaagcttgaaggaattgttccagaaagttggttgtt |
10164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 424 - 479
Target Start/End: Complemental strand, 10164 - 10109
Alignment:
| Q |
424 |
tacagtaaatatttatttttcttctccacttgggctattgctttcagatcacccaa |
479 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10164 |
tacagtaagtatttatttttcttctgcacttgggctattgctttcagatcacccaa |
10109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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