View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_41 (Length: 290)
Name: NF5258_low_41
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 32528111 - 32528368
Alignment:
| Q |
18 |
aaaacgacaacacatgaaagaacaccatcaaatattaacagacacaaaaccaccattgtggttggcaataaaccaaacgccttgaaagttgtagatttgg |
117 |
Q |
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| T |
32528111 |
aaaacgacgacacatgaaagaacaccatcaaatattaacagacacaaaaccaccattgtggttggcaataaaccaaacgccttgaaagttgtagatctgg |
32528210 |
T |
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| Q |
118 |
aaagaaccagaaatcagaggcaagaaatacaaccacaaactaaagatttcaaactgaacctacctagatggggnnnnnnnnnccaaaaccactgacgtaa |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32528211 |
aaagaaccagaaatcagaggcaagaaatacagccacaaactaaagatttcaaactgaacctacctagatgggg-tttttcttccaaaaccactgacgtaa |
32528309 |
T |
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| Q |
218 |
ccgccagagttctgaaataacaatggacaaacattcatcttctcgagtcaacattcatc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528310 |
ccgccagagttctgaaataacaatggacaaacattcatcttctcgagtcaacattcatc |
32528368 |
T |
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