View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_42 (Length: 290)
Name: NF5258_low_42
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 35035822 - 35035559
Alignment:
| Q |
20 |
gactagaggtggcagctaagttgaatgtgaactagtataa-cataacgtgcgtttctctcttctctcatttacttgaacattttatttatgatttaaatg |
118 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35035822 |
gactagaggtagcaactaagttgaatgtgaactagtataaacataacgtacgtttctctcttctctcatttacttgaacattttatttatgattgaaatg |
35035723 |
T |
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| Q |
119 |
atttgttaaagaacaatataagttgggaaagtgatttaagaaagatatttgagctttcggttggcaaaccatt-gggatcctaaaatactaaagattatc |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
35035722 |
atttgttaaagaactatataagttgggaaagtgatttaagaaagatatttgagctttcggttggcaaaccattggggatcctaaaataccaaagattatc |
35035623 |
T |
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| Q |
218 |
actgaaaataaatcacacaagtgacttagacacaacatcttcattcaaaaccataaagtattat |
281 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35035622 |
actaaaaataaatcacacaagtgacttggacacaacatcttcattcaaaaccataaagtattat |
35035559 |
T |
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