View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_43 (Length: 286)
Name: NF5258_low_43
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 48791831 - 48792099
Alignment:
| Q |
1 |
attacgtacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48791831 |
attacgtacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgtt |
48791930 |
T |
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| Q |
101 |
ttgaaacctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48791931 |
ttgaaacctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggt |
48792030 |
T |
|
| Q |
201 |
taatccactaataggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagt |
269 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48792031 |
taatccactaataggcctcacatatatattaacactgttttctttcataaaacagtcaactctcacagt |
48792099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 48833556 - 48833294
Alignment:
| Q |
7 |
tacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaa |
106 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
48833556 |
tacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttgaaa |
48833457 |
T |
|
| Q |
107 |
cctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatcc |
206 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||| |||||||| |
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| T |
48833456 |
cctgatattcattgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcatacgaccaagatcaacaacaattgttaatcc |
48833357 |
T |
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| Q |
207 |
actaataggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagt |
269 |
Q |
| |
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|||||||||||| ||||| ||||| ||| | ||||||||||||| ||||||| |||||||| |
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| T |
48833356 |
actaataggcctcacataaatatttacagtactttctttcataaagcagtcaatcctcacagt |
48833294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 15827303 - 15827571
Alignment:
| Q |
1 |
attacgtacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgtt |
100 |
Q |
| |
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||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| || ||||||| |
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| T |
15827303 |
attacttacctaacactatggccattgatcaagaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggaggtctttgtt |
15827402 |
T |
|
| Q |
101 |
ttgaaacctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggt |
200 |
Q |
| |
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||||| ||| |||||||||||| ||||| ||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||| |||| || || |
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| T |
15827403 |
ttgaagccttatattcagtgttctcagccgtaggcacaacttcaacttctctatcatgatattcaacaattttcatgagtccaagatcagcaaccattgt |
15827502 |
T |
|
| Q |
201 |
taatccactaataggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagt |
269 |
Q |
| |
|
|||||||||||||||||| ||| | | ||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
15827503 |
taatccactaataggcctcacaaaaaaattaacagtgttttctttcataaaacaatcaactctcacagt |
15827571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 48817385 - 48817647
Alignment:
| Q |
7 |
tacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaa |
106 |
Q |
| |
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||||||||||| || || |||||||| |||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
48817385 |
tacctaacactgtgaccattgatctgaaagccaggaccttgaggttgataactagcaagactatgctgttttggtccaaatggtggactttgttttgaaa |
48817484 |
T |
|
| Q |
107 |
cctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatcc |
206 |
Q |
| |
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|| || ||||| || ||||| |||||||| | ||||| ||||| ||||| || |||||||||||| ||| | ||||||| | || ||||| | ||| |
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| T |
48817485 |
ccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcattagactaagatcagccaccatggtgattcc |
48817584 |
T |
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| Q |
207 |
actaataggcctaacatatatattaacactgttttctttcataaaacagtcaactctcacagt |
269 |
Q |
| |
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| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
48817585 |
agtaataggcctaacatatatattaacagtactttctttcataaaacagtcaactctcacagt |
48817647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 40845799 - 40845655
Alignment:
| Q |
113 |
attcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttctgtagtccaagatcaacaacaatggttaatccactaat |
212 |
Q |
| |
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|||| ||||| ||| | |||||||||| |||||| |||| |||||||| |||||||| ||| ||| |||||||||||||||| | | |||| |||| |
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| T |
40845799 |
attctgtgttctcatccgtaggcacagcttcaataactctatcatgatactcaacaatcttcataagttcaagatcaacaacaattttaattccagtaat |
40845700 |
T |
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| Q |
213 |
aggcctaacatatatattaacactgttttctttcataaaacagtc |
257 |
Q |
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| T |
40845699 |
aggcctaacatatatattggcagtgttttctttcattaagcagtc |
40845655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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