View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_low_52 (Length: 254)
Name: NF5258_low_52
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 48965912 - 48966135
Alignment:
| Q |
13 |
taaattattctgatgactttggctgtcttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatccatatg |
112 |
Q |
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| T |
48965912 |
taaattcttctgatgactttggcagtcttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatccatatg |
48966011 |
T |
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| Q |
113 |
aggatatattgatgggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggcc |
212 |
Q |
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| T |
48966012 |
aggatatattgatgggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattcgggacccaaagcttactggcc |
48966111 |
T |
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| Q |
213 |
aagtcatgaacccaagggtacaag |
236 |
Q |
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| T |
48966112 |
aagtcatgaacccaagggtacaag |
48966135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 48958837 - 48958942
Alignment:
| Q |
126 |
gggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaaccc |
225 |
Q |
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| T |
48958837 |
gggtttattctaagggattccatgagggagacggtaaagagggagaaaccagtgaaggcgatggtgggaatttgaagcttatgggccaagtcataaaccc |
48958936 |
T |
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| Q |
226 |
aagggt |
231 |
Q |
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| T |
48958937 |
aggggt |
48958942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 13448962 - 13449039
Alignment:
| Q |
29 |
ctttggctgtcttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatc |
106 |
Q |
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| T |
13448962 |
ctttggcggttttccacacaaggtgatatggtgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
13449039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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