View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5259-Insertion-1 (Length: 665)
Name: NF5259-Insertion-1
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 368 - 654
Target Start/End: Original strand, 12672846 - 12673131
Alignment:
| Q |
368 |
cttagcggcatcggctaaactaacaatatttttatgaggtggtcatatatatacaaaataagatatattgttttttaaattgatagttaacttaaccaat |
467 |
Q |
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| T |
12672846 |
cttagcggcatcggcgaaactgacaatatttttataaggtggtcatatatataaaaaataagatatattgttttttaaattgatagttaacttaaccaat |
12672945 |
T |
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| Q |
468 |
aagaaaattaaaatgacaatagttaatttgcacgtggcaagtgattggttttaattcattaagagaagtgagaaaacaattaggtcgtgtcagattttct |
567 |
Q |
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| T |
12672946 |
aagaaaattaaaatgacaatagttaatttgcacgtggcaagtgattggttttaattcattaagagaagtgagaaaacaattaggtcgtgtcagattttct |
12673045 |
T |
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| Q |
568 |
tccatgattatttgagtaactacaaactatgaatataatgttattgattaacttgatttcaataccaatgaataaaattgttaggtt |
654 |
Q |
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| T |
12673046 |
tccatgattatttgagtaactataaactatgaatataatgttattgatt-acttgatttcaataccaatgaataaaatagttaggtt |
12673131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 12672403 - 12672484
Alignment:
| Q |
8 |
aattctgtaaaaaataaaatcaaagatgataattggattcatactc----atagagtgcccgaaaatagtatttacaatgag |
85 |
Q |
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| T |
12672403 |
aattgtgtaaaaaataaaatcaaagacgataattggattcatactcatagatagagtgcccgaaaatattatttacaatgag |
12672484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 5148752 - 5148793
Alignment:
| Q |
387 |
ctaacaatatttttatgaggtggtcatatatatacaaaataa |
428 |
Q |
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| T |
5148752 |
ctaacaatatttttatgaggtggccatatataaaaaaaataa |
5148793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 645
Target Start/End: Complemental strand, 16802457 - 16802301
Alignment:
| Q |
494 |
tttgcacgtggcaa-gtgattggttttaattcattaagaga-agtgagaaaacaattaggtcgtgtcagattttcttccatga-ttatttgagtaactac |
590 |
Q |
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| T |
16802457 |
tttgcacgtggcaaagtaattggttttagttccttaagagagagtaataaagcaactaggtcatgtcagatttccttccttgaattatctgaataaccac |
16802358 |
T |
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| Q |
591 |
aaact---atgaatataatgttattgattaacttgatttcaataccaatgaataaaat |
645 |
Q |
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| T |
16802357 |
aaacatacatgaatacaatgttattgatt-acttgattttaaaacctttgaataaaat |
16802301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 645
Target Start/End: Complemental strand, 16841743 - 16841587
Alignment:
| Q |
494 |
tttgcacgtggcaa-gtgattggttttaattcattaagaga-agtgagaaaacaattaggtcgtgtcagattttcttccatga-ttatttgagtaactac |
590 |
Q |
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| T |
16841743 |
tttgcacgtggcaaagtaattggttttagttccttaagagagagtaataaagcaactaggtcatgtcagatttccttccttgaattatctgaataaccac |
16841644 |
T |
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| Q |
591 |
aaact---atgaatataatgttattgattaacttgatttcaataccaatgaataaaat |
645 |
Q |
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| T |
16841643 |
aaacatacatgaatacaatgttattgatt-acttgattttaaaacctttgaataaaat |
16841587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 627
Target Start/End: Complemental strand, 38305343 - 38305291
Alignment:
| Q |
574 |
attatttgagtaactacaaactatgaatataatgttattgattaacttgatttc |
627 |
Q |
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| T |
38305343 |
attaattgagtaactactaactatgaatatagtgttattgatt-acttgatttc |
38305291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 644
Target Start/End: Original strand, 9024929 - 9024981
Alignment:
| Q |
591 |
aaactatgaatataatgttattgattaacttgatttcaataccaatgaataaaa |
644 |
Q |
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| T |
9024929 |
aaactatgaatacaatgttactgatt-acttgatttcaatacctttgaataaaa |
9024981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 653
Target Start/End: Complemental strand, 17850452 - 17850388
Alignment:
| Q |
588 |
tacaaactatgaatataatgttattgattaacttgatttcaataccaatgaataaaattgttaggt |
653 |
Q |
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| T |
17850452 |
tacaaactatgaatataatgctattgatt-actcgattttaatacctttgaacaaaatagttaggt |
17850388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 604
Target Start/End: Original strand, 26807118 - 26807213
Alignment:
| Q |
509 |
tgattggttttaattcattaagagaagtgagaaaacaattaggtcgtgtcagattttcttccat-gattatttgagtaactacaaactatgaatata |
604 |
Q |
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| T |
26807118 |
tgattagttttgattctttaagaga-gcgagaaaatgattaggtcatgtcaaagtttcttccctcggttatctaagtaactacaaactatgaatata |
26807213 |
T |
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