View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5259-Insertion-2 (Length: 371)
Name: NF5259-Insertion-2
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 29620046 - 29620410
Alignment:
| Q |
7 |
actgttaatagacaggtattttattcagttggtccattgcagataaatgctttactagattgcatatgtatttgatttttgtatcgttttgtgtgcaggt |
106 |
Q |
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| T |
29620046 |
actgttaatagacaggtattttattcagttggtccattgtagataaatgctttactagattgcatatgtatttgatttttgtatcgttttgtgtgcaggt |
29620145 |
T |
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| Q |
107 |
tttggattttgacttcgagaggtcatgttccgtctctttgtcaaaatttaatgtgtatgcgtgtttggtttgtggtaagtattaccaagggagagggaaa |
206 |
Q |
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| T |
29620146 |
tttggattttgacttcgagaggtcatgttccgtctctttgtcaaaatttaatgtgtatgcgtgtttggtttgtggtaagtattaccaagggagagggaaa |
29620245 |
T |
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| Q |
207 |
aggtctcatgcctatacgcatagcttggaagctggacaccatgtttatatcaatctcctaactgaaaaagtctactgtcttcccgatggttatgaagtta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29620246 |
aggtctcatgcctatacgcatagcttggaagctggacaccatgtttatatcaatctcctaactgaaaaagtctactgtcttcccgatggttatgaagtta |
29620345 |
T |
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| Q |
307 |
atgatccttcgttagatgacattcggcatgtcctgaacccaaggttcgtctaatttgttcatctg |
371 |
Q |
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| T |
29620346 |
atgatccttcgttagatgacatttggcatgtcctgaacccaaggttcgtctaatttgttcatctg |
29620410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 368
Target Start/End: Original strand, 29659033 - 29659398
Alignment:
| Q |
7 |
actgttaatagacaggtattttattcagttggtccattgcagataaatgctttactagattgcatatg----tatttgatttttgtatcgttttgtgtgc |
102 |
Q |
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| T |
29659033 |
actgttaatagacaggtattttattcatctggtgcattgtagataaatgttttgctagtttgcatatgtatgtatttgacttttgtatcattttgtgtgc |
29659132 |
T |
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| Q |
103 |
aggttttggattttgacttcgagaggtcatgttccgtctctttgtcaaaatttaatgtgtatgcgtgtttggtttgtggtaagtattaccaagggagagg |
202 |
Q |
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||||||||||||||||||| |||| || ||||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
29659133 |
aggttttggattttgactttgagaagttctgttctgtgtctttgtcaaatttaaatgtgtatgcatgtttggtttgtggtaagtattaccaaggtagagg |
29659232 |
T |
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| Q |
203 |
gaaaaggtctcatgcctatacgcatagcttggaagctggacaccatgtttatatcaatctcctaactgaaaaagtctactgtcttcccgatggttatgaa |
302 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||| |
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| T |
29659233 |
gaaaaagtctcatgcctatacgcatagtctggaagctggacaccatgtttatatcaatctcctgactgaaaaggtcttctgtcttcccgatggctatgaa |
29659332 |
T |
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| Q |
303 |
gttaatgatccttcgttagatgacattcggcatgtcctgaacccaaggttcgtctaatttgttcat |
368 |
Q |
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| T |
29659333 |
attgatgatccttcattagatgacattcggcatgtcctgaacccaaggttcgtctaatttgttcat |
29659398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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