View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5259-Insertion-3 (Length: 344)
Name: NF5259-Insertion-3
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 48276195 - 48275962
Alignment:
| Q |
8 |
tgagaaacaaagaagtataaagttgaaaggtaccctttgaatttcttagaagtatgtattaattcatcaaacaccaaacttgcaaatgaatcnnnnnnnn |
107 |
Q |
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| T |
48276195 |
tgagaaacaaagaagtataaagttgaaaggtaccctttgaatttcttagaagtatgtattaattcatcaaacaccaaacttgcaaatgaatcaaaaaaaa |
48276096 |
T |
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| Q |
108 |
n-----gtataaaactttctaccaacccaagattttaaatcggtagtgtagtaggtgataatattgtgttaaaatgagataaacattgatttaacacata |
202 |
Q |
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| T |
48276095 |
aaaaaagtataaaactttctaccaacccaagattttaaatcggtagtgtagtaggtgataatattgtgttaaaatgagataaacattgatttaacccata |
48275996 |
T |
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| Q |
203 |
agctgaagataaggagaaaaaaccggtttcgtaa |
236 |
Q |
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| T |
48275995 |
agctgaagataaggagaaaaaaacggtttcgtaa |
48275962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 48275920 - 48275864
Alignment:
| Q |
288 |
agatctaatctaagaggattaggacgtggagatacgagaaatccatgtttacaatac |
344 |
Q |
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| T |
48275920 |
agatctaatctaagaggattaggacgtggagatacgagaaatccatgtttacaatac |
48275864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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