View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5259-Insertion-6 (Length: 172)
Name: NF5259-Insertion-6
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259-Insertion-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 1e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 32450759 - 32450922
Alignment:
| Q |
9 |
aatttataacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggc |
108 |
Q |
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| T |
32450759 |
aatttataacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggc |
32450858 |
T |
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| Q |
109 |
tttgatgtcatcaatcacgttgaatcctctagctgaattattgttagccgctgctgttttctct |
172 |
Q |
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| T |
32450859 |
tttgatgtcatcaatcacgttgaatcctctagctgaattattgttagctgctgctgttttctct |
32450922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 32424719 - 32424871
Alignment:
| Q |
16 |
aacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatg |
115 |
Q |
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| T |
32424719 |
aacataactcacatgaacaacagagtcccgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatg |
32424818 |
T |
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| Q |
116 |
tcatcaatcacgttgaatcctctagctgaattattgttagccgctgctgtttt |
168 |
Q |
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| T |
32424819 |
tcatcaatcacgttgaatcctctagctgaattattgttagcagctgctgtttt |
32424871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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