View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5259_high_2 (Length: 462)
Name: NF5259_high_2
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 15020283 - 15020515
Alignment:
| Q |
18 |
agtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagggcgtgatttgcatctccatgctgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15020283 |
agtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagggcgtgatttgcatctccatactgag |
15020382 |
T |
|
| Q |
118 |
cataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgagccacttctaaactcttgcatttagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15020383 |
cataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgagccacttctaaactcttgcatttagc |
15020482 |
T |
|
| Q |
218 |
atacatatcaattagagcattaatccccgccaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
15020483 |
atacatatcaattagagcattaatccccgccaa |
15020515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 15027401 - 15027633
Alignment:
| Q |
18 |
agtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagggcgtgatttgcatctccatgctgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15027401 |
agtacacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagggcgtgatttgcatctccatactgag |
15027500 |
T |
|
| Q |
118 |
cataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgagccacttctaaactcttgcatttagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15027501 |
cataacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgagccacttctaaactcttgcatttagc |
15027600 |
T |
|
| Q |
218 |
atacatatcaattagagcattaatccccgccaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
15027601 |
atacatatcaattagagcattaatccccgccaa |
15027633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 15006169 - 15006398
Alignment:
| Q |
21 |
acacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagggcgtgatttgcatctccatgctgagcat |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
15006169 |
acacaagatatagtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagggcatgatttgcatcaccatactgagcat |
15006268 |
T |
|
| Q |
121 |
aacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgagccacttctaaactcttgcatttagcata |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15006269 |
aacctccaatcatcacagtccaagtcaccacatccctatctttaggacatatttcatcaaacatagcacgagccacttctaaactcttgcatttagcata |
15006368 |
T |
|
| Q |
221 |
catatcaattagagcattaatccccgccaa |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
15006369 |
catatcaattagagcattaatcaccgccaa |
15006398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 15045529 - 15045758
Alignment:
| Q |
21 |
acacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagggcgtgatttgcatctccatgctgagcat |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
15045529 |
acacaagatatagtaaaatcattaggaactatgcagttatcaattttaaacatttcagagaaaagttgcagggcatgatttgcatcaccatgctgagcat |
15045628 |
T |
|
| Q |
121 |
aacctccaatcatcacagtccaagtcaccacatccctatctttgggacatatttcatcaaacatcgcacgagccacttctaaactcttgcatttagcata |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15045629 |
aacctccaatcatcacagtccaagtcaccacatccctatctttaggacatatttcatcaaacatagcacgagccacttctaaactcttgcatttagcata |
15045728 |
T |
|
| Q |
221 |
catatcaattagagcattaatccccgccaa |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
15045729 |
catatcaattagagcattaatcaccgccaa |
15045758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 15020533 - 15020710
Alignment:
| Q |
277 |
tatgctcccccttgagaataaatttaattgaataacaatgagtttcttttccatgaagcaaagctccaacagacgcacaagcagaaagcaacgacat--g |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
15020533 |
tatgctcccccttgagaataaatttaattgaataacaatgagtttcttttccatgaagcaaagctccaacagacgcacaaccagaaagcaacgacatgag |
15020632 |
T |
|
| Q |
375 |
cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15020633 |
cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctg |
15020710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 15027651 - 15027828
Alignment:
| Q |
277 |
tatgctcccccttgagaataaatttaattgaataacaatgagtttcttttccatgaagcaaagctccaacagacgcacaagcagaaagcaacgacat--g |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
15027651 |
tatgctcccccttgagaataaatttaattgaataacaatgagtttcttttccatgaagcaaagctccaacagacgcacaaccagaaagcaacgacatgag |
15027750 |
T |
|
| Q |
375 |
cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15027751 |
cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctg |
15027828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 15045776 - 15045953
Alignment:
| Q |
277 |
tatgctcccccttgagaataaatttaattgaataacaatgagtttcttttccatgaagcaaagctccaacagacgcacaagcagaaagcaacgacat--g |
374 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15045776 |
tatgctcccccttgagaataaatttaactgaataacaatgagtttcttttccatgaagcaaagctccaacagacgcacaagcagaaagcaacgacatgag |
15045875 |
T |
|
| Q |
375 |
cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctg |
452 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15045876 |
cgtaaccacattaggacgacaacgacatccacacatttgccgaaacacatccattgcttcacaaccaaaccccctctg |
15045953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 15006416 - 15006593
Alignment:
| Q |
277 |
tatgctcccccttgagaataaatttaattgaataacaatgagtttcttttccatgaagcaaagctccaacagacgcacaagcagaaagcaacgacat--g |
374 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
15006416 |
tatgctcccccttgagaataaatttaactgaataacaatgagtttcttttccatgaagcaaagctccaacagacgcacaagcagaaagcaaagacatgag |
15006515 |
T |
|
| Q |
375 |
cgtaaccacattaggacgacaactacatccacacatttgccgaaacacatccattgcttcacaaccaaaccctctctg |
452 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15006516 |
cttaaccacattaggacgacaacgacatccacacattttccgaaacacatccattgcttcacaaccaaatcctctctg |
15006593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 15005717 - 15005802
Alignment:
| Q |
21 |
acacaagatatggtaaaatcattaggaactatacagttatcaaatttaaacatttcagagaaaagttgcagggcgtgatttgcatc |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15005717 |
acacaagatatagtaaaatcattaggaactatgcagttatcaattttaaacatttcagagaaaagttgcagggcatgatttgcatc |
15005802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University