View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5259_high_4 (Length: 343)
Name: NF5259_high_4
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 27716511 - 27716831
Alignment:
| Q |
18 |
atttacattattttttacgtaagaaaaaatttctcctaatttgtctactagttattacaaatagattttcttagaatgtaagtaaaaatgcagagacaaa |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27716511 |
atttacattattttt-acgtaagaaaaaatttctcctaatttgtctactagttaatacaaatagattttcttagaatgtaagtaaaaatgcagagacaac |
27716609 |
T |
|
| Q |
118 |
ca----taaaccccaaacgcaagctaccttaattgtctaatttcattacttcttcggtaaggatataattaacaaacaatatggtagctttctttaaatt |
213 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27716610 |
caaatataaaccccaaacgcaagctacctcaattgtctaatttcattacttcttcggtaaggatataatttacaaacaatatggtagctttctttaaatt |
27716709 |
T |
|
| Q |
214 |
gaagctgaaccaatgtagctttctccataatctctagaatatgaagcaaccagcatcattttaagtgaagg-tttagcttgatttccacaagcagcccct |
312 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||| |||| ||| |
|
|
| T |
27716710 |
gaagccgaaccaatgtagctttctccttaatctctagaatatgaagcaatcagcatcatttt-agtgaaggttttagcttaatttccacaaccagcacct |
27716808 |
T |
|
| Q |
313 |
cccacaggtttctttttcatctc |
335 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27716809 |
cccacaggtttctttttcatctc |
27716831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University