View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5259_high_6 (Length: 248)
Name: NF5259_high_6
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 3182931 - 3183149
Alignment:
| Q |
14 |
atgaagcacaaacgcaccaaccagtaacggtagaggtagtaaca-taacatagtcaaagaaatacacaaggctcaagcgagaaacgcgagtgccaacaag |
112 |
Q |
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| T |
3182931 |
atgaagcacaaacgcaccatccagtaacggtagaggtagtaacagtaacatagtcaaagaaatacacaaggctcaatcgagaaacgcgagtgccaacaag |
3183030 |
T |
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| Q |
113 |
aacggctaagagcaatccaagtgtgatatagtacatacattgtagacaaacaatttgagcaacaataagccaagggtcccataccactgcaccatagaac |
212 |
Q |
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| T |
3183031 |
aactgttaagagcaatccaagtgtgatatagtacatacattgtagacaaacaatttgagcaacaataagccaagggtcccataccactgcaccatagaac |
3183130 |
T |
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| Q |
213 |
atgactcctacccaaaaca |
231 |
Q |
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| T |
3183131 |
atgactcctacccaaaaca |
3183149 |
T |
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