View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5259_low_1 (Length: 585)
Name: NF5259_low_1
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 304 - 580
Target Start/End: Original strand, 20495230 - 20495530
Alignment:
| Q |
304 |
ttctaatcgacaatgaagaatgacttggttaatttgtctatatactatccttacatattaaatcagaacataaataacatattctaagccatgaaaattg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20495230 |
ttctaatcgacaatgaagaatgacttggttaatttgtctatatattatccttacatattaaatcagaacataaataacatattctaagccatgacaattg |
20495329 |
T |
|
| Q |
404 |
aactttgttgacccatatttcattctccactgtgtaca--------atgaaactatgctgttgtaaaatcagaagtgagctgaattttacaaatattctc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20495330 |
aactttgttgacccatatttcattctccactgtgtacaatgaaattatgaaactctgctgttgtaaaatcagaagtgagctgaattttacaaatattctc |
20495429 |
T |
|
| Q |
496 |
aacattcaaaagagcat-aaaaaacacaaata---------------aatcacattcattgaccaagtagcatccattgacatttaaacagaataattta |
579 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20495430 |
aacattcaaaagagcataaaaaaacaaaaataattaaatcactaaataatcacattcattgaccaagtagcatccattgacatttaaacagaataattta |
20495529 |
T |
|
| Q |
580 |
c |
580 |
Q |
| |
|
| |
|
|
| T |
20495530 |
c |
20495530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 20494738 - 20494787
Alignment:
| Q |
202 |
gttttgtgtaggtaacattgttgaacactgatgcagaagtttctgttatg |
251 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20494738 |
gttttgtgtaggtatcattgttgaacactgatgcagaagtttctgttatg |
20494787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 47625165 - 47625119
Alignment:
| Q |
205 |
ttgtgtaggtaacattgttgaacactgatgcagaagtttctgttatg |
251 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47625165 |
ttgtgcaggtaacattgttgaacactgatgcagatgtttctgttatg |
47625119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 47643231 - 47643400
Alignment:
| Q |
13 |
gtttgggcatttagcttgattgaaaattcgattgtgaagaagagaataggtctatatctaattcttgtgattggtttgttgacaagcttcaaaaaggagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47643231 |
gtttgggcatttagcttgattgaaaattcgattgtgaagaagagaataggtctatatctaattcttgtgattggtt-------------caaaaaggagt |
47643317 |
T |
|
| Q |
113 |
taaaatacatgat-----------tatatgatgttttggatggttttgtattttagagcttactgtgttatgttgttgctgctgatatg |
190 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47643318 |
taaaatacatgatgcaaggacccgtatatgatgttt-ggatggttttgtattttagagcttactgtgtt-----gttgctgctgatatg |
47643400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 47643477 - 47643540
Alignment:
| Q |
242 |
ttctgttatgctgcaaaaatatctatgagcaacttcttgatgagctttaactgctgcacttttt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47643477 |
ttctgttatgctgcaaaaatatctatgagcaacttcttgatgagctttaactgctgcacttttt |
47643540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University