View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5259_low_3 (Length: 434)
Name: NF5259_low_3
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 24134751 - 24135151
Alignment:
| Q |
20 |
tatctctatattttaaaa-aatccagacacactttctagtattattgctactttctgtagcatagcagaggcttgggcccctgtagggatacacctagct |
118 |
Q |
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| T |
24134751 |
tatctctatattttaaaaaaatccagacacgctttctagtattattgctactttctgtagcatagcagaggcttgggcccctgtagggatacacctagct |
24134850 |
T |
|
| Q |
119 |
tcacctctggctttatacttagttattccctaaatgctactgaccatattttcccaaccttttattccttctaatctaatgttgacgttctatattaggg |
218 |
Q |
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| T |
24134851 |
tcacctctggctttatgcttagttattccctaaatgctactgaccatattttcccaaccttttattccttctaatctaatgttgacgttctatattaggg |
24134950 |
T |
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| Q |
219 |
gtttaacaaagtgagtttgtgcgagttttaggaggtcaaattgagggttggatggactttagatctgattaatcatttatccaatatatccatggcatgt |
318 |
Q |
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| T |
24134951 |
gtttaacaaagtgagtttgtgcgagttttaggaggtcaaattgagggtt-gatggactttagatctgattaatcatttatccaatatatccatggcatgt |
24135049 |
T |
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| Q |
319 |
ttagtggatacatgtcatggatggatttccaacccgccattcaaattaattatattttttgcattttaaatcgattatcgatccccccgttctctattga |
418 |
Q |
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| T |
24135050 |
ttagtggatacatgtcatggatggatttccaacccgccattcaaattaattatattttttgcattttaaatcgattatcgatccccccgttctctattga |
24135149 |
T |
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| Q |
419 |
tg |
420 |
Q |
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| T |
24135150 |
tg |
24135151 |
T |
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