View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5259_low_6 (Length: 333)
Name: NF5259_low_6
Description: NF5259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5259_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 45390004 - 45389696
Alignment:
| Q |
6 |
cataggcagagttcaagataaaatatggtgttgatatatatttcaacacatattgtggaaagaagcactgcatgaaacatgaaatatgtcagaatcttgt |
105 |
Q |
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| T |
45390004 |
cataggcagagttcaagataaaatatggtgttgatatatatttcaacacatattgtggaaagaagcactgcatgaaacatgaaatatgtcagaatcttgt |
45389905 |
T |
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| Q |
106 |
acaatcttcctgagctaatgatgaaagttcatggaaacataccaggtctggataagaagacatggcactggtgcagtttttatccaggttctgtactgac |
205 |
Q |
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| T |
45389904 |
acaatcttcctgagctaatgatgaaagttcatggaaacataccaggtctggataagaagacattgcactggtgcagtttttattcaggttctgtactgac |
45389805 |
T |
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| Q |
206 |
ccctgttacacaagacaaaactatgtcaagtaagcctgtttactgttacccgcttttctttctcttatgcaatttgaaaaattcaatatagggaatagca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45389804 |
ccctgttacacaagacaaaactatgtcaagtaagcctgtttactgttacccgcttttctttctcttatgcaatttgaaaaattcaatatagggaatagca |
45389705 |
T |
|
| Q |
306 |
tgtggattc |
314 |
Q |
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||||||||| |
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| T |
45389704 |
tgtggattc |
45389696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 318
Target Start/End: Complemental strand, 45374846 - 45374534
Alignment:
| Q |
6 |
cataggcagagttcaagataaaatatggtgttgatatatatttcaacacatattgtggaaagaagcactgcatgaaacatgaaatatgtcagaatcttgt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45374846 |
cataggcagagttcaagataaaatatggtgttgatatatatttcaacacatattgtggaaagaagcactgcatgaaacacgaaatatgtcagaatcttgt |
45374747 |
T |
|
| Q |
106 |
acaatcttcctgagctaatgatgaaagttcatggaaacataccaggtctggataagaagacatggcactggtgcagtttttatccaggttctgtactgac |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| || ||||||||||||| |
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| T |
45374746 |
acaatcatcctgagctaatgatgaaagttcatggaaacatactaggtctggataagaaggcatcgcactggtgcaatttttattcaagttctgtactgac |
45374647 |
T |
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| Q |
206 |
ccctgttacacaagacaaaactatgtcaagtaagcctgtttactgttacccgcttttctttctcttatgcaatttgaaaaattcaatatagggaatagca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45374646 |
ccctgttacacaagacaaaactatgtcaagtaagcccgtttactgttgcccacttttctttctcttatgcaatttgaaaaattcaatatagggaatagca |
45374547 |
T |
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| Q |
306 |
tgtggattccttt |
318 |
Q |
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||||| ||||||| |
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| T |
45374546 |
tgtggcttccttt |
45374534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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