View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5260-Insertion-1 (Length: 598)
Name: NF5260-Insertion-1
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5260-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 203 - 431
Target Start/End: Complemental strand, 19559764 - 19559538
Alignment:
| Q |
203 |
ctattttatactatataacactcactttaataagacttttgtaaaaatatctaatttagtgctcccctctgttcttttgtaagtgccattttattgaaaa |
302 |
Q |
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| T |
19559764 |
ctattttataatatataacactcactttaataagacttttgtaaaaatatctaatttagtgctccc-tctgttcttttgtaagtgccattttattgaaaa |
19559666 |
T |
|
| Q |
303 |
tatgttgttgttttcaaattttaatgtagattatttttggaaagaaaaatttgaagtagtattaatctttgctttggtaa-aaaattccgaactatgtat |
401 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||| ||||||||| |
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| T |
19559665 |
tatgttgtt---ttcaaattttaatgtatattatttttggaaagaaaattttgaagtagtattaatcgttgctttggtaaaaaaattcccgactatgtat |
19559569 |
T |
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| Q |
402 |
tgactta-taatattcataagttctgactat |
431 |
Q |
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||||| | |||| |||||||||| |||||| |
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| T |
19559568 |
tgactgacaaatactcataagttccgactat |
19559538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 203 - 431
Target Start/End: Complemental strand, 19553405 - 19553179
Alignment:
| Q |
203 |
ctattttatactatataacactcactttaataagacttttgtaaaaatatctaatttagtgctcccctctgttcttttgtaagtgccattttattgaaaa |
302 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
19553405 |
ctattttataatatataacactcactttaataagacttttgtaaaaatatctaatttagtgct-ccctctgctcttttgtaagtgccattttattgaaaa |
19553307 |
T |
|
| Q |
303 |
tatgttgttgttttcaaattttaatgtagattatttttggaaagaaaaatttgaagtagtattaatctttgctttggt-aaaaaattccgaactatgtat |
401 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| |||||| ||| |||||||||| ||||||||| |
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| T |
19553306 |
ta---tgttgttttcaaattttaatgtatattatttttggaaagaaaattttgaagctgtattaattgttgcttgggtaaaaaaattcccgactatgtat |
19553210 |
T |
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| Q |
402 |
tgacttata-atattcataagttctgactat |
431 |
Q |
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||||||||| ||| |||||||||| |||||| |
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| T |
19553209 |
tgacttatatatactcataagttccgactat |
19553179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 206 - 384
Target Start/End: Complemental strand, 19537081 - 19536906
Alignment:
| Q |
206 |
ttttatactatataacactcactttaataagacttttgtaaaaatatctaatttagtgctcccctctgttcttttgtaagtgccattttattgaaaatat |
305 |
Q |
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||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |
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| T |
19537081 |
ttttataatatataacaatcactttaataagactttcgtaaaaatatctaatttagtgct-ccctctgtt-ttttataagtgccattttattgaaaata- |
19536985 |
T |
|
| Q |
306 |
gttgttgttttcaaattttaatgtaga--ttatttttggaaagaaaaatttgaagtagtattaatctttgctttggtaaaa |
384 |
Q |
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| T |
19536984 |
--tgttgttttcatattttaatgtagattttttttttggaaagaaaattttgaagtagtattaattgttgctttggtaaaa |
19536906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 206 - 431
Target Start/End: Original strand, 18481972 - 18482193
Alignment:
| Q |
206 |
ttttatactatataacactcactttaataagacttttgtaaaaatatctaatttagtgctcccctctgttcttttgtaagtgccattttattgaaaatat |
305 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
18481972 |
ttttataatatataacactcactttaataagacttttgtaaaaatatctaatttagtgct-ccctccattcttttgtaagtgccattttatttaaaat-- |
18482068 |
T |
|
| Q |
306 |
gttgttgttttcaaattttaatgtagattatttttggaaagaaaaatttgaagtagtattaatctttgctttggtaaaaaa-ttccgaactatgtattga |
404 |
Q |
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||||||||||||||||||||||| | ||||||| | || ||| ||||||||||||| || ||||||||||||| |||| |||||||||| | |
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| T |
18482069 |
-ttgttgttttcaaattttaatgt--aatattttttggaattttttttttaagtagtattaattgtttctttggtaaaaaacttcccgactatgtattaa |
18482165 |
T |
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| Q |
405 |
cttat-aatattcataagttctgactat |
431 |
Q |
| |
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||||| |||| |||||||||| |||||| |
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| T |
18482166 |
cttataaatactcataagttccgactat |
18482193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 19559904 - 19559832
Alignment:
| Q |
57 |
ttgaaaggagttttgttgaaaatgaatattcttgatttctatatttttgttaatggaggtataacaaatagtc |
129 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19559904 |
ttgaaaggagttttgttgaaaatgaacattcttgatttctatattttagttaatggaggtataacaaatagtc |
19559832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 19553550 - 19553478
Alignment:
| Q |
57 |
ttgaaaggagttttgttgaaaatgaatattcttgatttctatatttttgttaatggaggtataacaaatagtc |
129 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||| |
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| T |
19553550 |
ttgaaaggagttttgttgaaaatgaacattcttgatttctatattttagttaatagaggtattacaaatagtc |
19553478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 19537232 - 19537160
Alignment:
| Q |
57 |
ttgaaaggagttttgttgaaaatgaatattcttgatttctatatttttgttaatggaggtataacaaatagtc |
129 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
19537232 |
ttgaaaggagttttgttgaaaacgaacattcttgatttctacattttagttaatggaggtataataaatagtc |
19537160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 18481839 - 18481912
Alignment:
| Q |
60 |
aaaggagttttgttgaaaatgaatattcttgatttctatatttttgttaat----ggaggtataacaaatagtc |
129 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||| |
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| T |
18481839 |
aaaggagttttgttgaaaatgaacattcttaatttctagatttttgttaatggagggaggtataacaaatagtc |
18481912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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