View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5260-Insertion-2 (Length: 357)
Name: NF5260-Insertion-2
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5260-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 39480676 - 39480440
Alignment:
| Q |
12 |
caagctgctttccatgttcatcatctgaaacaagacctgatgcatttttaggagttgcatcagtctcatgtgagctggattctgagttcgcaactctact |
111 |
Q |
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| T |
39480676 |
caagctgctttccatgttcatcatcagaaacaagacctgatgcatttgtaagagttgcatcagtctcatgtgagctggattctgagttcacaactctact |
39480577 |
T |
|
| Q |
112 |
tttccttttcttagctgcatagagcataatgaaattattatgattacaaattttaagatgtatcagcatcctcatttgt-aaataaaagaattcataaaa |
210 |
Q |
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||| |||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39480576 |
tttttgtttcttagatgcatagaacataatgaaattattttgaatacaaattttaagatgtatcagcatcctcatttgtaaaataaaagaattcataaaa |
39480477 |
T |
|
| Q |
211 |
gttaat-catttatatcaatcacttataggcaataaa |
246 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
39480476 |
gttaatacatttatatcaatcacttataggcaataaa |
39480440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 44792527 - 44792351
Alignment:
| Q |
12 |
caagctgctttccatgttcatcatctgaaacaagacctgatgcatttttaggagttgcatcagtctcatgtgagctggattctgagttcgcaactctact |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44792527 |
caagctgctttccatgttcatcatctgaaacaagacctgatgcatttttaggagttgcatcagtctcatgtgagctggattctgagttcgcaactctact |
44792428 |
T |
|
| Q |
112 |
tttccttttcttagctgcatagagcataatgaaattattatgattacaaattttaagatgtatcagcatcctcattt |
188 |
Q |
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| T |
44792427 |
tttccttttcttagctgcatagagcataattaaattattatgattacaaattttaagatgtattagcatcctcattt |
44792351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 38884061 - 38883904
Alignment:
| Q |
12 |
caagctgctttccatgttcatcatctgaaacaagacctgatgcatttttaggagttgcatcagtctcatgtgagctggattctgagttcgcaactctact |
111 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||| ||||||||||||| ||||||| |||||||||| |
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| T |
38884061 |
caagctgctctccatgttcatcatctgaaacaagatctgatttatttttaggagcggcattagtctcgtgtgagctggattatgagttcacaactctact |
38883962 |
T |
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| Q |
112 |
tttccttttcttagctgcatagagcataatgaaattattatgattacaaattttaaga |
169 |
Q |
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||| | | |||||||||||||| ||||||| ||||||| | ||||||||||||||| |
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| T |
38883961 |
ttttcgtatcttagctgcatagtacataatggaattattccggttacaaattttaaga |
38883904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 39159076 - 39159179
Alignment:
| Q |
12 |
caagctgctttccatgttcatcatctgaaacaagacctgatgcatttttaggagttgca---tcagtctcatgtgagctggattctgagttcgcaactct |
108 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| |||||| |
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| T |
39159076 |
caagttgctctccatgttcatcatctgaaacaagacctgatgcatttttaggagttgcatcgtcagtctcgtatgaactggattctgagttcacaactcc |
39159175 |
T |
|
| Q |
109 |
actt |
112 |
Q |
| |
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|||| |
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|
| T |
39159176 |
actt |
39159179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 44792356 - 44792294
Alignment:
| Q |
216 |
tcatttatatcaatcacttataggcaat-aaagtttgactcggt--aaattggtggtgattat |
275 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
44792356 |
tcatttatatcaatcacttataggcaataaaagtttgactcggttcaaattggtggtgattat |
44792294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 28780698 - 28780813
Alignment:
| Q |
38 |
gaaacaagacctgatgcatttttaggagt---tgcatcagtctcatgtgagctggattctgagttcgcaactctacttttccttttcttagctgcataga |
134 |
Q |
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||||||||| ||||||||||| |||||| |||||||||||| | ||| ||||||||||| || ||| |||| ||||| | |||||||||||||| | |
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| T |
28780698 |
gaaacaagatctgatgcatttctaggagcagctgcatcagtctcgtttgaactggattctgaatttgcagctctgctttttcgtttcttagctgcatgta |
28780797 |
T |
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| Q |
135 |
gcataatgaaattatt |
150 |
Q |
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||| |||||| ||||| |
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| T |
28780798 |
gcacaatgaagttatt |
28780813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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