View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5260-Insertion-3 (Length: 327)
Name: NF5260-Insertion-3
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5260-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 15020287 - 15019973
Alignment:
| Q |
8 |
gtactcatggcttgtgctcgtttggcagcattgaggtttggtaagcagattcatgcttatgtgttgcgtagaagtcgtattgattcagatgttctgtttg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15020287 |
gtactcatggcttgtgctcgtttggcagcattgaggtttggtaagcagattcatgcttatgtgttgcgtagaagtcgtattgattcagatgttctgtttg |
15020188 |
T |
|
| Q |
108 |
tggctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgccatctcttggac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15020187 |
tggctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgccatctcttggac |
15020088 |
T |
|
| Q |
208 |
ctcgctactcaccgggtatggcatgcatgggtgcagcgaagatgctttccgtgtttttgatgagatggggaaagaggctctagtgcttgatggcataacc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15020087 |
ctcgctactcaccgggtatggcatgcatgggtgcagcgaagatgctttccgtgtttttgatgagatgaggaaagaggctctagtgcttgatggcataacc |
15019988 |
T |
|
| Q |
308 |
tttccttgttgtgctt |
323 |
Q |
| |
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||| |||||||||||| |
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| T |
15019987 |
ttt-cttgttgtgctt |
15019973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 15027405 - 15027091
Alignment:
| Q |
8 |
gtactcatggcttgtgctcgtttggcagcattgaggtttggtaagcagattcatgcttatgtgttgcgtagaagtcgtattgattcagatgttctgtttg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15027405 |
gtactcatggcttgtgctcgtttggcagcattgaggtttggtaagcagattcatgcttatgtgttgcgtagaagtcgtattgattcagatgttctgtttg |
15027306 |
T |
|
| Q |
108 |
tggctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgccatctcttggac |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15027305 |
tggctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgccatctcttggac |
15027206 |
T |
|
| Q |
208 |
ctcgctactcaccgggtatggcatgcatgggtgcagcgaagatgctttccgtgtttttgatgagatggggaaagaggctctagtgcttgatggcataacc |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15027205 |
ctcgctactcaccgggtatggcatgcatgggtgcagcgaagatgctttccgtgtttttgatgagatgaggaaagaggctctagtgcttgatggcataacc |
15027106 |
T |
|
| Q |
308 |
tttccttgttgtgctt |
323 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
15027105 |
ttt-cttgttgtgctt |
15027091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 15006167 - 15005856
Alignment:
| Q |
11 |
ctcatggcttgtgctcgtttggcagcattgaggtttggtaagcagattcatgcttatgtgttgcgtagaagtcgtattgattcagatgttctgtttgtgg |
110 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||| |
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|
| T |
15006167 |
ctcatgtcttgtgctcgtttgtcagcattgatttttggtaagcatattcatgcttatgttttgcgtagaagtcttatttattcagatgttttgtttgtgg |
15006068 |
T |
|
| Q |
111 |
ctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgccatctcttggacctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15006067 |
ctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgccatctcttggacctc |
15005968 |
T |
|
| Q |
211 |
gctactcaccgggtatggcatgcatgggtgcagcgaagatgctttccgtgtttttgatgagatggggaaagaggctctagtgcttgatggcataaccttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15005967 |
gctactcaccgggtatggcatgcatgggtgcagcgaagatgcttttcgtgtttttgatgagatgaggaaagaggctctagtgcttgatggcataaccttt |
15005868 |
T |
|
| Q |
311 |
ccttgttgtgctt |
323 |
Q |
| |
|
|||||||||||| |
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|
| T |
15005867 |
-cttgttgtgctt |
15005856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 15005715 - 15005404
Alignment:
| Q |
11 |
ctcatggcttgtgctcgtttggcagcattgaggtttggtaagcagattcatgcttatgtgttgcgtagaagtcgtattgattcagatgttctgtttgtgg |
110 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| ||||||||||| ||||||||| |||| ||||| ||||||| || ||||||||||| ||||||||| |
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| T |
15005715 |
ctcatgtcctgtgctcgtttgtcagcattgaaatttggtaagcaaattcatgctcatgtattgcgaagaagtcatagcaattcagatgttttgtttgtgg |
15005616 |
T |
|
| Q |
111 |
ctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgccatctcttggacctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
15005615 |
ctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaaaagaaatgccgtctcgtggacctc |
15005516 |
T |
|
| Q |
211 |
gctactcaccgggtatggcatgcatgggtgcagcgaagatgctttccgtgtttttgatgagatggggaaagaggctctagtgcttgatggcataaccttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15005515 |
gctactcaccgggtatggcatgcatgggcgcagcgaagatgcttttcgtgtttttgatgagatgaggaaagaggctctagtgcttgatggcataaccttt |
15005416 |
T |
|
| Q |
311 |
ccttgttgtgctt |
323 |
Q |
| |
|
|||||||||||| |
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|
| T |
15005415 |
-cttgttgtgctt |
15005404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 15045527 - 15045216
Alignment:
| Q |
11 |
ctcatggcttgtgctcgtttggcagcattgaggtttggtaagcagattcatgcttatgtgttgcgtagaagtcgtattgattcagatgttctgtttgtgg |
110 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||| ||||||| ||| ||||||||||| ||||||||| |
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|
| T |
15045527 |
ctcatgtcctgtgctcgtttgtcagcattgaattttggtaagcaaattcatgcttatgtattgcgaagaagtcttatctattcagatgttttgtttgtgg |
15045428 |
T |
|
| Q |
111 |
ctaattgtctcatagacatgtattccaaatccggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgccatctcttggacctc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
15045427 |
ctaattgtctcatagacatgtattccaaatctggagatgtagatactgcccaagtagttttcgacagcatgtcaaagagaaatgctgtctcttggacctc |
15045328 |
T |
|
| Q |
211 |
gctactcaccgggtatggcatgcatgggtgcagcgaagatgctttccgtgtttttgatgagatggggaaagaggctctagtgcttgatggcataaccttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| |
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|
| T |
15045327 |
gctactcaccgggtatggcatgcatggacgcagcgaagatgctttccgtgtttttgatgagatgaggaaagaagctctagtgcctgatggcataaccttt |
15045228 |
T |
|
| Q |
311 |
ccttgttgtgctt |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15045227 |
-cttgttgtgctt |
15045216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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