View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5260_high_1 (Length: 688)

Name: NF5260_high_1
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5260_high_1
NF5260_high_1
[»] chr7 (8 HSPs)
chr7 (10-291)||(14804169-14804450)
chr7 (10-291)||(15251163-15251444)
chr7 (490-672)||(14803787-14803969)
chr7 (490-672)||(15250781-15250963)
chr7 (16-280)||(14811598-14811862)
chr7 (16-280)||(15258593-15258857)
chr7 (332-428)||(14804031-14804127)
chr7 (332-428)||(15251025-15251121)
[»] chr5 (5 HSPs)
chr5 (28-283)||(17533684-17533925)
chr5 (16-280)||(17522318-17522582)
chr5 (490-548)||(17534391-17534449)
chr5 (348-425)||(17534066-17534143)
chr5 (622-664)||(17534480-17534521)
[»] chr1 (1 HSPs)
chr1 (150-280)||(44902045-44902175)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 14804450 - 14804169
Alignment:
Q  10 aagaatatctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttagg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14804450 aagaaaatctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttagg 14804351  T
Q  110 aagcagcttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14804350 aagcagcttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctc 14804251  T
Q  210 ttattgatagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatatagttactag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14804250 ttattgatagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatatagttactag 14804169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 15251444 - 15251163
Alignment:
Q  10 aagaatatctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttagg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15251444 aagaaaatctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttagg 15251345  T
Q  110 aagcagcttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15251344 aagcagcttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctc 15251245  T
Q  210 ttattgatagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatatagttactag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15251244 ttattgatagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatatagttactag 15251163  T

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Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 490 - 672
Target Start/End: Complemental strand, 14803969 - 14803787
Alignment:
Q  490 ataattattaaagatggattataataccattactcaagattggcaacagataaagcaataaagcacaaataatttttatttcttttcaatctttggaggt 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14803969 ataattattaaagatggattataataccattactcaagattggcaacagataaagcaataaagcacaaataatttttatttcttttcaatctttggaggt 14803870  T
Q  590 atagcttgcaaaacaagataatcaaaagatttcaaaggagatttgcctctagaatgtgtggagtttttagggttaatattttt 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14803869 atagcttgcaaaacaagataatcaaaagatttcaaaggagatttgcctctagaatgtgtggagtttttagggttaatattttt 14803787  T

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Target: chr7; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 490 - 672
Target Start/End: Complemental strand, 15250963 - 15250781
Alignment:
Q  490 ataattattaaagatggattataataccattactcaagattggcaacagataaagcaataaagcacaaataatttttatttcttttcaatctttggaggt 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15250963 ataattattaaagatggattataataccattactcaagattggcaacagataaagcaataaagcacaaataatttttatttcttttcaatctttggaggt 15250864  T
Q  590 atagcttgcaaaacaagataatcaaaagatttcaaaggagatttgcctctagaatgtgtggagtttttagggttaatattttt 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15250863 atagcttgcaaaacaagataatcaaaagatttcaaaggagatttgcctctagaatgtgtggagtttttagggttaatattttt 15250781  T

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Target: chr7; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 14811862 - 14811598
Alignment:
Q  16 atctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttaggaagcag 115  Q
    |||||||  |||||||||||||||||| || |  || |||||  ||| ||||||| |||||||||||||||||| |||||| ||||| || | |||||||    
T  14811862 atctgaacacgagaaattacaaactcgaaagaatgtagaagaggacagaaggcctaaaattgaagcagcaatagtgaggattatgaaattcaagaagcag 14811763  T
Q  116 cttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattg 215  Q
    ||||||||||  ||| ||||  ||||||| || |||||||||| |||||| ||||||| |||||||| ||| || |||||||||||||||||||||||||    
T  14811762 cttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttcttaatccaacagagataaagaaaaggattgaatctcttattg 14811663  T
Q  216 atagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaat 280  Q
    | || ||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  14811662 aaagagattacttggagagggacaatattcacaataatttgaataggtatcttgcatgaagaaat 14811598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 15258857 - 15258593
Alignment:
Q  16 atctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttaggaagcag 115  Q
    |||||||  |||||||||||||||||| || |  || |||||  ||| ||||||| |||||||||||||||||| |||||| ||||| || | |||||||    
T  15258857 atctgaacacgagaaattacaaactcgaaagaatgtagaagaggacagaaggcctaaaattgaagcagcaatagtgaggattatgaaattcaagaagcag 15258758  T
Q  116 cttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattg 215  Q
    ||||||||||  ||| ||||  ||||||| || |||||||||| |||||| ||||||| |||||||| ||| || |||||||||||||||||||||||||    
T  15258757 cttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttcttaatccaacagagataaagaaaaggattgaatctcttattg 15258658  T
Q  216 atagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaat 280  Q
    | || ||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  15258657 aaagagattacttggagagggacaatattcacaataatttgaataggtatcttgcatgaagaaat 15258593  T

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Target: chr7; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 332 - 428
Target Start/End: Complemental strand, 14804127 - 14804031
Alignment:
Q  332 ctgtctaccttaacaaattgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttcagagtgagtaatatttctaatgc 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  14804127 ctgtctaccttaacaaattgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttctaagtgagtaatatttctaatgc 14804031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 332 - 428
Target Start/End: Complemental strand, 15251121 - 15251025
Alignment:
Q  332 ctgtctaccttaacaaattgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttcagagtgagtaatatttctaatgc 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  15251121 ctgtctaccttaacaaattgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttctaagtgagtaatatttctaatgc 15251025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 28 - 283
Target Start/End: Original strand, 17533684 - 17533925
Alignment:
Q  28 gaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttaggaagcagcttgatcatagt 127  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||| |                 
T  17533684 gaaactacaaacccggaaaagcgtggaagaaaacagaaggcctcaaatttaagcagcaattgtgaggatcatgaagtttaggaagaa------------- 17533770  T
Q  128 aatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattgatagggattact 227  Q
     |||||||| ||||||| || ||||||||||| || ||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |||||||    
T  17533771 -atgttattgcagaggtgacaaaggagttaatctctttattccttcctaatccaacagatatcaagaaaaggattgaatctcttattgaaagagattact 17533869  T
Q  228 tggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatata 283  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17533870 tggagagggacagtattgacaataatttgtataggtatcttgcatgaagaaatata 17533925  T

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Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 17522318 - 17522582
Alignment:
Q  16 atctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttaggaagcag 115  Q
    |||||||  |||||||||||||||||| || |  || |||||  | | ||| |||||||||||||||||||||| |||||| ||||| || | |||||||    
T  17522318 atctgaacacgagaaattacaaactcgaaagaatgtagaagaggatagaagacctcaaattgaagcagcaatagtgaggattatgaaattcaagaagcag 17522417  T
Q  116 cttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattg 215  Q
    ||||||||||  ||| ||||  ||||||| || |||||||||| |||||| ||||||| |||||||| ||| || |||||||||||||| ||||||||||    
T  17522418 cttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttcttaatccaacagaaataaagaaaaggattgagtctcttattg 17522517  T
Q  216 atagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaat 280  Q
    | || ||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||    
T  17522518 aaagagattacttggagagggacaatattgacaataatttgtataggtatctagcataaagaaat 17522582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 548
Target Start/End: Original strand, 17534391 - 17534449
Alignment:
Q  490 ataattattaaagatggattataataccattactcaagattggcaacagataaagcaat 548  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17534391 ataatttttaaagatggattacaatacaattactcaagattggcaacagataaagcaat 17534449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 17534066 - 17534143
Alignment:
Q  348 attgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttcagagtgagtaatatttctaa 425  Q
    |||||||| || |||||||||||||||||||||||||||| ||||| ||||| |||||  |||||| |||||||||||    
T  17534066 attgatgtgttgttatttttcctgttttgtggatatgattcaaaatctggcttgtttctaagtgagcaatatttctaa 17534143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 664
Target Start/End: Original strand, 17534480 - 17534521
Alignment:
Q  622 caaaggagatttgcctctagaatgtgtggagtttttagggtta 664  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  17534480 caaaggagatttgcctctagaatctgtgga-tttttagggtta 17534521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 44902045 - 44902175
Alignment:
Q  150 aggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattgatagggattacttggagagggacagtattgacac 249  Q
    ||||||||| |||||||||||||| |||||||| | | || |||||||  ||||||||||||||||| || ||||||||||||||||||| ||||||||     
T  44902045 aggagttaaagtcattattccttcttaatccaacaaagataaagaaaataattgaatctcttattgaaagagattacttggagagggacaatattgacaa 44902144  T
Q  250 taatttgtataggtatcttgcatgaagaaat 280  Q
    |||||||||||||||||||||||||||||||    
T  44902145 taatttgtataggtatcttgcatgaagaaat 44902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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