View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5260_high_5 (Length: 406)
Name: NF5260_high_5
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5260_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Complemental strand, 700363 - 699974
Alignment:
| Q |
7 |
agcataggaagtacatatataacctcagttaacgcaagcggagacctaagtggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggtt |
106 |
Q |
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| T |
700363 |
agcataggaagtacaaatataacctcagttaacgcaagcggagacctaagtagaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggtt |
700264 |
T |
|
| Q |
107 |
cctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700263 |
cctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattt |
700164 |
T |
|
| Q |
207 |
tccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaat |
306 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700163 |
tccatcaggcaaaacccatgcatttgtttgaccatacatagtctcgggtctcaacgtcgcagcagcaagaaaaaccttctttccttcaagagccttaaat |
700064 |
T |
|
| Q |
307 |
ttatcaggaaaaggcgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagca |
396 |
Q |
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| T |
700063 |
ttatcaggaaaaggcgataccaactccatcttgataatcatatactcttgaggctgaacaccttcaccactagccctatcatgatcagca |
699974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 392
Target Start/End: Original strand, 23261762 - 23262145
Alignment:
| Q |
9 |
cataggaagtacatatataacctcagttaacgcaagcggagacctaagtggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcc |
108 |
Q |
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||||||||| |||||||||| |||| | || | ||| ||||| | | ||||| ||||||||||| ||||| || ||||||||||| ||||| |||| | |
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| T |
23261762 |
cataggaagcacatatataatctcattcaaggaaagaggagatttcacaggaagcccgatcaaatcctgacccgtaagctcaagcaaacaagtcggtttc |
23261861 |
T |
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| Q |
109 |
tgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttc |
208 |
Q |
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|||||||| || ||||| || ||||||||||| ||||| ||||| ||||| | | |||||| ||||| |||||| | || ||||| || |||||||| | |
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| T |
23261862 |
tgaggtaccctagagtgattttggtaagcaagattaagcgctgccctatgcgctacaacaaacacctccgtttcattaatctcaaaagccccatatttcc |
23261961 |
T |
|
| Q |
209 |
catcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaattt |
308 |
Q |
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|||||||||| | ||| |||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||| || | | ||||||| || |
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| T |
23261962 |
catcaggcaacacccaagcatttgtttgaccatacatagtctcaggcctcaacgtcgccgcagcaagaaaaaccttctttccctccaaaaccttaaactt |
23262061 |
T |
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| Q |
309 |
atcaggaaaaggcgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatc |
392 |
Q |
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||||||||||| || |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23262062 |
ctcaggaaaaggagaaaccacctccatcttaataatcgtatactcttgcggctgaacaccttcaccactagccctatcatgatc |
23262145 |
T |
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