View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5260_high_6 (Length: 392)
Name: NF5260_high_6
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5260_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 25 - 377
Target Start/End: Original strand, 19688479 - 19688838
Alignment:
| Q |
25 |
gaagttattttgggacgaaaggagtatgatcaatatttttgataaatgaaatattaaatat-------gtgttttcttctcaatttgttatgcaaggagg |
117 |
Q |
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| T |
19688479 |
gaagttattttgagacgaaaggagtatgatctatatttttgataaatgaaatattaaatcttgcttttgtgttttcttctcaatttgttatgcaaggagg |
19688578 |
T |
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| Q |
118 |
aaccttattacttgatatttctaacattataaatctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatc |
217 |
Q |
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| T |
19688579 |
aaccttattacttgatatttctaacattataaatctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatc |
19688678 |
T |
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| Q |
218 |
attgttcatacctttttctcattttcctccaaagaaaatgcgaaaaggttgcttctaccactatacaccagcaatgataactcccactgcacttttaaac |
317 |
Q |
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| T |
19688679 |
attgttcatacctttttctcattttcctccaaagaaaatgcgaaaaggttgcttctaccactatacaccagcaatgataactcccactgcacttataaac |
19688778 |
T |
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| Q |
318 |
ttgcattcctgtgaggttggttgttatcgcaatttcataatcttcaatatataatttttt |
377 |
Q |
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| T |
19688779 |
ttgcattcctgtgaggttggttgttatcagaattttataatcttcaatatataatttttt |
19688838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 151 - 338
Target Start/End: Complemental strand, 19626854 - 19626667
Alignment:
| Q |
151 |
tctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaa |
250 |
Q |
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| T |
19626854 |
tctaacagacatggttagttggagaggactgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaa |
19626755 |
T |
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| Q |
251 |
gaaaatgcgaaaaggttgcttctaccactatacaccagcaatgataactcccactgcacttttaaacttgcattcctgtgaggttggt |
338 |
Q |
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| T |
19626754 |
gaaaatgcaaaaaggttgcctgtaccactatacaccagcaatgatcactcctactacactcgtaaacttgcactcgtgtgaggttggt |
19626667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 151 - 301
Target Start/End: Original strand, 35360331 - 35360481
Alignment:
| Q |
151 |
tctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaa |
250 |
Q |
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| T |
35360331 |
tctaatagatatggttagttggggatgaatgggatgaatatgagcaaatggaagcaccgaaaggatcattgttcataccattttctcattttcctccaaa |
35360430 |
T |
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| Q |
251 |
gaaaatgcgaaaaggttgcttctaccactatacaccagcaatgataactcc |
301 |
Q |
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| T |
35360431 |
gaaaatgcgaaaagattgcttctaccactatacaccagcaatgattactcc |
35360481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 152 - 301
Target Start/End: Original strand, 35382704 - 35382853
Alignment:
| Q |
152 |
ctaacagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaag |
251 |
Q |
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| T |
35382704 |
ctaacagatatggttagttggggatgaatgggatgaagatgagcaattgaaagcaccagaagggtcattattcataccattttctcatttccctccaaag |
35382803 |
T |
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| Q |
252 |
aaaatgcgaaaaggttgcttctaccactatacaccagcaatgataactcc |
301 |
Q |
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| T |
35382804 |
aaaatgagaaaatgttgcttctaccactttacaccagcaatgataactcc |
35382853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 156 - 301
Target Start/End: Original strand, 35372705 - 35372850
Alignment:
| Q |
156 |
cagatatggttagttggagatgattgggatgaagatgagcaaatgcaagcatcagaaggatcattgttcatacctttttctcattttcctccaaagaaaa |
255 |
Q |
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| T |
35372705 |
cagatatggctagttggagatgaatgggatgaatatgagcaaatggaagcaccgaaaggatcattattcataccattttctcatttccctccaaagaaaa |
35372804 |
T |
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| Q |
256 |
tgcgaaaaggttgcttctaccactatacaccagcaatgataactcc |
301 |
Q |
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| T |
35372805 |
tgcgaaaagattgcttctaccactatacaccagcaatgattactcc |
35372850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 2253573 - 2253510
Alignment:
| Q |
211 |
aaggatcattgttcatacctttttctcattttcctccaaagaaaatgcgaaaaggttgcttcta |
274 |
Q |
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|||||||||||||| |||| ||||| || || |||||||||||| | ||||||| ||||||||| |
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| T |
2253573 |
aaggatcattgttcgtaccattttcccaattccctccaaagaaatttcgaaaagattgcttcta |
2253510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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