View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5260_low_1 (Length: 688)
Name: NF5260_low_1
Description: NF5260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5260_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 14804450 - 14804169
Alignment:
| Q |
10 |
aagaatatctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttagg |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14804450 |
aagaaaatctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttagg |
14804351 |
T |
|
| Q |
110 |
aagcagcttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14804350 |
aagcagcttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctc |
14804251 |
T |
|
| Q |
210 |
ttattgatagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatatagttactag |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14804250 |
ttattgatagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatatagttactag |
14804169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 15251444 - 15251163
Alignment:
| Q |
10 |
aagaatatctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttagg |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15251444 |
aagaaaatctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttagg |
15251345 |
T |
|
| Q |
110 |
aagcagcttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15251344 |
aagcagcttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctc |
15251245 |
T |
|
| Q |
210 |
ttattgatagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatatagttactag |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15251244 |
ttattgatagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatatagttactag |
15251163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 490 - 672
Target Start/End: Complemental strand, 14803969 - 14803787
Alignment:
| Q |
490 |
ataattattaaagatggattataataccattactcaagattggcaacagataaagcaataaagcacaaataatttttatttcttttcaatctttggaggt |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14803969 |
ataattattaaagatggattataataccattactcaagattggcaacagataaagcaataaagcacaaataatttttatttcttttcaatctttggaggt |
14803870 |
T |
|
| Q |
590 |
atagcttgcaaaacaagataatcaaaagatttcaaaggagatttgcctctagaatgtgtggagtttttagggttaatattttt |
672 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14803869 |
atagcttgcaaaacaagataatcaaaagatttcaaaggagatttgcctctagaatgtgtggagtttttagggttaatattttt |
14803787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 490 - 672
Target Start/End: Complemental strand, 15250963 - 15250781
Alignment:
| Q |
490 |
ataattattaaagatggattataataccattactcaagattggcaacagataaagcaataaagcacaaataatttttatttcttttcaatctttggaggt |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15250963 |
ataattattaaagatggattataataccattactcaagattggcaacagataaagcaataaagcacaaataatttttatttcttttcaatctttggaggt |
15250864 |
T |
|
| Q |
590 |
atagcttgcaaaacaagataatcaaaagatttcaaaggagatttgcctctagaatgtgtggagtttttagggttaatattttt |
672 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15250863 |
atagcttgcaaaacaagataatcaaaagatttcaaaggagatttgcctctagaatgtgtggagtttttagggttaatattttt |
15250781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 14811862 - 14811598
Alignment:
| Q |
16 |
atctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttaggaagcag |
115 |
Q |
| |
|
||||||| |||||||||||||||||| || | || ||||| ||| ||||||| |||||||||||||||||| |||||| ||||| || | ||||||| |
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|
| T |
14811862 |
atctgaacacgagaaattacaaactcgaaagaatgtagaagaggacagaaggcctaaaattgaagcagcaatagtgaggattatgaaattcaagaagcag |
14811763 |
T |
|
| Q |
116 |
cttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattg |
215 |
Q |
| |
|
|||||||||| ||| |||| ||||||| || |||||||||| |||||| ||||||| |||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
14811762 |
cttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttcttaatccaacagagataaagaaaaggattgaatctcttattg |
14811663 |
T |
|
| Q |
216 |
atagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaat |
280 |
Q |
| |
|
| || ||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
14811662 |
aaagagattacttggagagggacaatattcacaataatttgaataggtatcttgcatgaagaaat |
14811598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 15258857 - 15258593
Alignment:
| Q |
16 |
atctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttaggaagcag |
115 |
Q |
| |
|
||||||| |||||||||||||||||| || | || ||||| ||| ||||||| |||||||||||||||||| |||||| ||||| || | ||||||| |
|
|
| T |
15258857 |
atctgaacacgagaaattacaaactcgaaagaatgtagaagaggacagaaggcctaaaattgaagcagcaatagtgaggattatgaaattcaagaagcag |
15258758 |
T |
|
| Q |
116 |
cttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattg |
215 |
Q |
| |
|
|||||||||| ||| |||| ||||||| || |||||||||| |||||| ||||||| |||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
15258757 |
cttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttcttaatccaacagagataaagaaaaggattgaatctcttattg |
15258658 |
T |
|
| Q |
216 |
atagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaat |
280 |
Q |
| |
|
| || ||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
15258657 |
aaagagattacttggagagggacaatattcacaataatttgaataggtatcttgcatgaagaaat |
15258593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 332 - 428
Target Start/End: Complemental strand, 14804127 - 14804031
Alignment:
| Q |
332 |
ctgtctaccttaacaaattgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttcagagtgagtaatatttctaatgc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14804127 |
ctgtctaccttaacaaattgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttctaagtgagtaatatttctaatgc |
14804031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 332 - 428
Target Start/End: Complemental strand, 15251121 - 15251025
Alignment:
| Q |
332 |
ctgtctaccttaacaaattgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttcagagtgagtaatatttctaatgc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
15251121 |
ctgtctaccttaacaaattgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttctaagtgagtaatatttctaatgc |
15251025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 28 - 283
Target Start/End: Original strand, 17533684 - 17533925
Alignment:
| Q |
28 |
gaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttaggaagcagcttgatcatagt |
127 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||| | |
|
|
| T |
17533684 |
gaaactacaaacccggaaaagcgtggaagaaaacagaaggcctcaaatttaagcagcaattgtgaggatcatgaagtttaggaagaa------------- |
17533770 |
T |
|
| Q |
128 |
aatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattgatagggattact |
227 |
Q |
| |
|
|||||||| ||||||| || ||||||||||| || ||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
17533771 |
-atgttattgcagaggtgacaaaggagttaatctctttattccttcctaatccaacagatatcaagaaaaggattgaatctcttattgaaagagattact |
17533869 |
T |
|
| Q |
228 |
tggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaatata |
283 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17533870 |
tggagagggacagtattgacaataatttgtataggtatcttgcatgaagaaatata |
17533925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 17522318 - 17522582
Alignment:
| Q |
16 |
atctgaattcgagaaattacaaactcggaaaagcgtggaagaaaacataaggcctcaaattgaagcagcaatagcgaggatcatgaagtttaggaagcag |
115 |
Q |
| |
|
||||||| |||||||||||||||||| || | || ||||| | | ||| |||||||||||||||||||||| |||||| ||||| || | ||||||| |
|
|
| T |
17522318 |
atctgaacacgagaaattacaaactcgaaagaatgtagaagaggatagaagacctcaaattgaagcagcaatagtgaggattatgaaattcaagaagcag |
17522417 |
T |
|
| Q |
116 |
cttgatcatagtaatgttattacagaggtaactaaggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattg |
215 |
Q |
| |
|
|||||||||| ||| |||| ||||||| || |||||||||| |||||| ||||||| |||||||| ||| || |||||||||||||| |||||||||| |
|
|
| T |
17522418 |
cttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttcttaatccaacagaaataaagaaaaggattgagtctcttattg |
17522517 |
T |
|
| Q |
216 |
atagggattacttggagagggacagtattgacactaatttgtataggtatcttgcatgaagaaat |
280 |
Q |
| |
|
| || ||||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
17522518 |
aaagagattacttggagagggacaatattgacaataatttgtataggtatctagcataaagaaat |
17522582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 548
Target Start/End: Original strand, 17534391 - 17534449
Alignment:
| Q |
490 |
ataattattaaagatggattataataccattactcaagattggcaacagataaagcaat |
548 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17534391 |
ataatttttaaagatggattacaatacaattactcaagattggcaacagataaagcaat |
17534449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 17534066 - 17534143
Alignment:
| Q |
348 |
attgatgtattcttatttttcctgttttgtggatatgatttaaaatttggctggtttcagagtgagtaatatttctaa |
425 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| ||||||||||| |
|
|
| T |
17534066 |
attgatgtgttgttatttttcctgttttgtggatatgattcaaaatctggcttgtttctaagtgagcaatatttctaa |
17534143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 664
Target Start/End: Original strand, 17534480 - 17534521
Alignment:
| Q |
622 |
caaaggagatttgcctctagaatgtgtggagtttttagggtta |
664 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
17534480 |
caaaggagatttgcctctagaatctgtgga-tttttagggtta |
17534521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 44902045 - 44902175
Alignment:
| Q |
150 |
aggagttaatgtcattattccttcctaatccaatagatattaagaaaaggattgaatctcttattgatagggattacttggagagggacagtattgacac |
249 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| | | || ||||||| ||||||||||||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
44902045 |
aggagttaaagtcattattccttcttaatccaacaaagataaagaaaataattgaatctcttattgaaagagattacttggagagggacaatattgacaa |
44902144 |
T |
|
| Q |
250 |
taatttgtataggtatcttgcatgaagaaat |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44902145 |
taatttgtataggtatcttgcatgaagaaat |
44902175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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